CDS Information : BBR47_55570

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Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	5,875,876 / 5,874,920 / -
Location	complement(5874920..5875876)
Type	CDS
Length	957 bp (318 aa)

Product	SN-glycerol-3-phosphate transport system permease protein
Gene name	ugpA
Functional category	Cell envelope and cellular processes - Transport/binding proteins and lipoproteins
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:P10905 Pubmed:8282692

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=4e-92 Q2B376_9BACI Sugar ABC transporter, permease protein Alignment 2 E=9e-76 Q180R4_CLOD6 ABC transporter, permease protein Alignment 3 E=2e-57 A7B8C9_RUMGN Putative uncharacterized protein Alignment 4 E=4e-55 A0P084_9RHOB ABC transporter, membrane spanning protein Glycerol-3-phosphate Alignment 5 E=5e-55 Q2AEA1_9FIRM Binding-protein-dependent transport systems inner membrane component precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000515 Binding-protein-dependent transport systems inner membrane component (Family) PF00528   BPD_transp_1 PS50928   ABC_TM1
SignalP	No significant hit
TMHMM	Transmembrane 6
SOSUI	Transmembrane 6

size of protein	318 amino acids
molecular mass	35,491.75 Da
pI	6.95
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.2 (26aa) 6.6 (21aa) 13.5 (43aa) 10.1 (32aa) 5.7 (18aa) 3.1 (10aa) 4.1 (13aa) 3.5 (11aa) 6.6 (21aa) 8.5 (27aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (17aa) 0.3 (1aa) 3.1 (10aa) 4.7 (15aa) 4.4 (14aa) 2.8 (9aa) 1.3 (4aa) 2.5 (8aa) 3.5 (11aa) 2.2 (7aa)

>BBR47_55570 SN-glycerol-3-phosphate transport system permease protein
ATGCGAAAAGCGGCAACTGTACAGGAGTTGCCGGGTGTAAGCCAGTCAAAAAAAGAAGTG
AGTTCACAGGCATTTGCATGGTCTGACCTCGCATCCCGGCTGCGTCCGTACTTGTATCTG
GCACCCGCATTGATTTGCTTTGCCCTGTTCTTCTTTTACCCGATTGGCTCGATCATTTAT
TTGAGCTTTCAGGACTGGTCATTGATCAATTTGGAGCAAATGGAATGGGTAGGCTTGCAA
AACTATCAGGACTTGATGGTAGACGGGGATTTTCATCAAGTATTGGGAAATACCGCGGTC
TTTACCATTGCGACAGTGGGGATCGGCTTGACGCTATCCTTCCTGCTCGCCCTGTGGCTG
AACAAAAAGGCAAAGGTGTACGGCATTATTCAGGCGACTGTTTTCAGTCCTCACATTATT
TCGCTGGTATCTGTCTCGATGCTGTGGATGTGGCTGATGGACCCGCAGTTTGGCCTGTTG
AACGCAGGACTGGAAGCGGTCGGATTGCCTGCGTATACGTGGCTGACTGATCCAAAAAGC
TCCTTGCTGTCACTGATTATCGTCAGCATTTGGAAAGGTGTCGGCTATAACACGCTCATT
TTCATCGCAGGATTGCAAAGCATTCCGGGCGATATATACGAGGCAGCAGCGCTCGATCAA
TCGCCGTGGTGGCGGACGCTGAGACGGATTACGATACCGATGCTGTCGCCGACCATTTTC
TTTTTGCTCATTATTAATACGATCTCATCCTTCCAAGCGTTTGACACGATCGCCATTATG
ACACAGGGTGGTCCAATCAATAGTACGAACATGCTTGTCTACTACATTTACGAGCAGGGC
ATGGACTTCTACAATGGCGGGATTGCTTCGGCTGCCTCTGTCATTTTGCTGATACTAGTA
GGGATTTTAACAGCTGTACATTTCTTGGTGATGTCCAAGCGCGTGCATTATCGTTGA


>BBR47_55570 SN-glycerol-3-phosphate transport system permease protein
MRKAATVQELPGVSQSKKEVSSQAFAWSDLASRLRPYLYLAPALICFALFFFYPIGSIIY
LSFQDWSLINLEQMEWVGLQNYQDLMVDGDFHQVLGNTAVFTIATVGIGLTLSFLLALWL
NKKAKVYGIIQATVFSPHIISLVSVSMLWMWLMDPQFGLLNAGLEAVGLPAYTWLTDPKS
SLLSLIIVSIWKGVGYNTLIFIAGLQSIPGDIYEAAALDQSPWWRTLRRITIPMLSPTIF
FLLIINTISSFQAFDTIAIMTQGGPINSTNMLVYYIYEQGMDFYNGGIASAASVILLILV
GILTAVHFLVMSKRVHYR

NBRC No.	clone name	start	stop	length(bp)
G10-001-217	BB1FE1L10024F04	5,842,375	5,886,637	44,263
G10-001-218	BB1FE1L11001H10	5,873,944	5,911,674	37,731

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.