CDS Information : CE0030

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Genomic map

Display

Corynebacterium efficiens YS-314^T (= NBRC 100395^T) chromosome

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Overview
Genome

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Location

Organism	Corynebacterium efficiens YS-314^T (= NBRC 100395^T)
Replicon	chromosome
Start / Stop / Direction	30,892 / 31,578 / +
Location	30892..31578
Type	CDS
Length	687 bp (228 aa)

Annotation

Product	conserved hypothetical protein
Gene name
Functional category	has Similarities
EC number
Note
KEGG pathway
Sequence feature
References

UniProt	Q8FUI8
INSD	BAC16840.1 (DDBJ GenBank EMBL)
RefSeq	NP_736640.1
GI	25026586
GeneID	1032159
UniParc	UPI00000DDBBD

Computational search results

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=1e-124	Q8FUI8_COREF	Putative uncharacterized protein	Alignment
2	E=1e-124	C8NRS4_COREF	Rhomboid family	Alignment
3	E=1e-75	Q8NUA4_CORGL	Uncharacterized membrane protein (Homolog of Drosophila rhomboid) PUTATIVE TRANSMEMBRANE PROTEIN, RHOMBOID FAMILY	Alignment
4	E=5e-72	A4Q9W7_CORGB	Putative uncharacterized protein	Alignment
5	E=5e-47	Q6NKJ1_CORDI	Putative membrane protein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:25.0

IPR002610 Rhomboid-like protein (Family)
	PF01694 Rhomboid
IPR022764 Peptidase S54, rhomboid domain (Domain)
	PF01694 Rhomboid

SignalP

No significant hit

TMHMM

Transmembrane 6

SOSUI

Transmembrane 6

Calculated information (Amino acid sequence)

size of protein

228 amino acids

molecular mass

24,693.29 Da

9.63

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
11.8 (27aa)	10.1 (23aa)	14.9 (34aa)	7.5 (17aa)	3.9 (9aa)	3.9 (9aa)	4.4 (10aa)	3.5 (8aa)	9.6 (22aa)	5.7 (13aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.3 (12aa)	0 (0aa)	2.6 (6aa)	2.6 (6aa)	3.5 (8aa)	0.4 (1aa)	2.2 (5aa)	4.4 (10aa)	2.6 (6aa)	0.9 (2aa)

Sequence

>CE0030 conserved hypothetical protein
ATGCAGACGCTGTTATGGAGACACCACACAGTGAAAATCACAGATATCTACCGCCAGGCA
CCGGCCAGCACCACCATCTCGCTGGTGGTCATCGCGGTCTACCTCATCACCGCCTTCCAA
TCCAGGTCGGTGCAGAACAACCTCTGGGACAGTTCCCTGGCGGACAGCTGGATCCTCTGG
GCTCCGGCGATGACCGACGGCATCGGTGCCCTCCGTGCCATCGGGGGCATGTTCCTCCAC
ATCGGCCCCGGCCATATGCTGCTCAATCTCGTGCTGCTCTGGTTGCTGGGACGTGAGATT
GAAAACTACTTCGGGCCAGCACTGTTCACCGTCATGTACTTCGTCGGTGGCATCGGTGCC
TCCGCCGCGGTGGTGTGGTTTGATCCGCTCAGCCCCACCGCCGGCGCCTCCGGGGCCGTC
TACGCCATGATGTCCATCCTGGTGGGCCTGTTCTACCTCCGCGGGGCGGACCTGCGTGCC
CCGCTCGCCCTGATCGCCGTCAACATCGGGTACACCTTCCTGGCTGTCAATGTCTCCCTG
TGGGGCCACCTGGGCGGACTGGTCGCCGGTGCGCTGCTGGTGTGGCCGATGGTCCGTGCC
CAGACCCGCCGGGCACAGTGGACCATTGCCCTCAGTGGCCTGGTGGTGGTCATCGTGGTG
TTGTTCCTCGGCATCCCCTACCCCTGA


>CE0030 conserved hypothetical protein
MQTLLWRHHTVKITDIYRQAPASTTISLVVIAVYLITAFQSRSVQNNLWDSSLADSWILW
APAMTDGIGALRAIGGMFLHIGPGHMLLNLVLLWLLGREIENYFGPALFTVMYFVGGIGA
SAAVVWFDPLSPTAGASGAVYAMMSILVGLFYLRGADLRAPLALIAVNIGYTFLAVNVSL
WGHLGGLVAGALLVWPMVRAQTRRAQWTIALSGLVVVIVVLFLGIPYP