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CDS Information : CE1351

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Corynebacterium efficiens YS-314T (= NBRC 100395T) chromosome

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Overview 
Genome

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Organism Corynebacterium efficiens YS-314T (= NBRC 100395T)
Replicon chromosome
Start / Stop / Direction 1,416,437 / 1,417,942 / +
Location 1416437..1417942
Type CDS
Length 1,506 bp (501 aa)

close this sectionAnnotation

Product putative glutamyl-tRNA amidotransferase subunit B
Gene name
Functional category Annotated
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionRelated links to external database

UniProtQ8FPY5
INSDBAC18161.1 (DDBJ GenBank EMBL)
RefSeqNP_737961.1
GI25027907
GeneID1033716
UniParcUPI00000DE1F4

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0C8NL48_COREFGlutamyl-tRNA(Gln) amidotransferase, B subunitAlignment
2E=0GATB_COREFAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit BAlignment
3E=0GATB_CORGBAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit BAlignment
4E=0GATB_CORGLAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit BAlignment
5E=0GATB_CORDIAspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit BAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (Domain)
 [356-500]  8.1e-42 PF02637
PF02637   GatB_Yqey
 [348-501]  5.4e-28 SSF89095
SSF89095   GatB/YqeY domain
IPR004413 Glutamyl-tRNA(Gln) amidotransferase B subunit (Family)
 [15-501]  5.7e-151 TIGR00133
TIGR00133   gatB: glutamyl-tRNA(Gln) and/or aspartyl-tRN
 [16-501]  35.72 MF_00121
MF_00121   GATB_MF_00121
 [166-180]  PS01234
PS01234   GATB
IPR006075 GatB N-terminal region (Domain)
 [21-317]  1.9e-111 PF02934
PF02934   GatB_N
IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (Conserved_site)
 [166-180]  PS01234
PS01234   GATB
IPR018027 Asn/Gln amidotransferase (Domain)
 [353-500]  1.2e-61 SM00845
SM00845   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 501 amino acids
molecular mass 54,549.46 Da
pI 4.53
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.4
(62aa)		8.4
(42aa)		8.2
(41aa)		5.4
(27aa)		1.8
(9aa)		1.4
(7aa)		4.8
(24aa)		2
(10aa)		7.6
(38aa)		4.4
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(29aa)		0.4
(2aa)		3.8
(19aa)		2.8
(14aa)		2.8
(14aa)		5
(25aa)		1.6
(8aa)		5.6
(28aa)		6.8
(34aa)		9.2
(46aa)

open this sectionSequence