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CDS Information : CE2057

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close this sectionGenomic map

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Corynebacterium efficiens YS-314T (= NBRC 100395T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Corynebacterium efficiens YS-314T (= NBRC 100395T)
Replicon chromosome
Start / Stop / Direction 2,179,507 / 2,177,921 / -
Location complement(2177921..2179507)
Type CDS
Length 1,587 bp (528 aa)

close this sectionAnnotation

Product UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
Gene name murF
Functional category Annotated
EC number 6.3.2.10
Note
KEGG pathway
Sequence feature
References

close this sectionRelated links to external database

UniProtQ8FNT6
INSDBAC18867.1 (DDBJ GenBank EMBL)
RefSeqNP_738667.1
GI25028613
GeneID1032068
UniParcUPI00000DE377

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q8FNT6_COREFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligaseAlignment
2E=0C8NQ16_COREFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligaseAlignment
3E=0Q8NNN1_CORGLUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligaseAlignment
4E=0A4QFM7_CORGBUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligaseAlignment
5E=1e-170C2BNI5_9CORYUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000713 Cytoplasmic peptidoglycan synthetase, N-terminal (Domain)
 [55-107]  7.5e-10 PF01225
PF01225   Mur_ligase
IPR004101 Cytoplasmic peptidoglycan synthetases, C-terminal (Domain)
 [370-519]  1.50000306971087e-29 G3DSA:3.90.190.20
G3DSA:3.90.190.20   Mur_ligase_C
 [371-514]  1.9e-32 SSF53244
SSF53244   Mur_ligase_C
 [372-458]  7.7e-15 PF02875
PF02875   Mur_ligase_C
IPR005863 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase (Family)
 [57-513]  7.40000780398351e-127 TIGR01143
TIGR01143   murF
IPR013221 Mur ligase, central (Domain)
 [128-368]  2.80000504261125e-57 G3DSA:3.40.1190.10
G3DSA:3.40.1190.10   Mur_ligase_cen
 [157-350]  8.1e-37 PF08245
PF08245   Mur_ligase_M
 [150-369]  6.2e-52 SSF53623
SSF53623   Mur_ligase_cen
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 528 amino acids
molecular mass 54,787.54 Da
pI 5.39
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.7
(88aa)		10.8
(57aa)		8
(42aa)		3.2
(17aa)		2.1
(11aa)		0.8
(4aa)		5.1
(27aa)		1.7
(9aa)		8.9
(47aa)		5.7
(30aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.2
(38aa)		0.6
(3aa)		2.7
(14aa)		2.5
(13aa)		1.3
(7aa)		1.5
(8aa)		3.6
(19aa)		6.3
(33aa)		6.6
(35aa)		4.9
(26aa)

open this sectionSequence