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CDS Information : CE2490

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Corynebacterium efficiens YS-314T (= NBRC 100395T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Corynebacterium efficiens YS-314T (= NBRC 100395T)
Replicon chromosome
Start / Stop / Direction 2,658,962 / 2,657,682 / -
Location complement(2657682..2658962)
Type CDS
Length 1,281 bp (426 aa)

close this sectionAnnotation

Product 5'-phosphoribosylglycinamide synthetase
Gene name purD
Functional category Annotated
EC number 6.3.4.13
Note
KEGG pathway
Sequence feature
References

close this sectionRelated links to external database

UniProtQ8FML3
INSDBAC19300.1 (DDBJ GenBank EMBL)
RefSeqNP_739100.1
GI25029046
GeneID1032104
UniParcUPI00000DE51C

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0Q8FML3_COREF5'-phosphoribosylglycinamide synthetaseAlignment
2E=0C8NK59_COREFPhosphoribosylamine--glycine ligaseAlignment
3E=0PUR2_CORGLPhosphoribosylamine--glycine ligase
GARS
Glycinamide ribonucleotide synthetase
Phosphoribosylglycinamide synthetase
Alignment
4E=0A4QGZ9_CORGBPutative uncharacterized proteinAlignment
5E=1e-177Q6NFF9_CORDIPutative phosphoribosylamine--glycine ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000115 Phosphoribosylglycinamide synthetase (Domain)
 [327-412]  5.6e-23 PF02843
PF02843   GARS_C
 [326-420]  4.7e-24 G3DSA:3.90.600.10
G3DSA:3.90.600.10   no description
 [1-416]  3.5e-181 TIGR00877
TIGR00877   purD: phosphoribosylamine--glycine ligase
 [102-291]  1.8e-63 PF01071
PF01071   GARS_A
 [1-101]  7.5e-33 PF02844
PF02844   GARS_N
 [285-292]  PS00184
PS00184   GARS
IPR000115 Phosphoribosylglycinamide synthetase (Family)
 [1-416]  3.5e-181 TIGR00877
TIGR00877   purD: phosphoribosylamine--glycine ligase
 [1-415]  39.881 MF_00138
MF_00138   PUR2_MF_00138
IPR011054 Rudiment single hybrid motif (Domain)
 [324-417]  6.4e-24 SSF51246
SSF51246   Rudiment single hybrid motif
IPR011761 ATP-grasp fold (Domain)
 [108-311]  27.874 PS50975
PS50975   ATP_GRASP
IPR013815 ATP-grasp fold, subdomain 1 (Domain)
 [123-186]  3e-08 G3DSA:3.30.1490.20
G3DSA:3.30.1490.20   no description
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [187-316]  1e-45 G3DSA:3.30.470.20
G3DSA:3.30.470.20   no description
IPR013817 Pre-ATP-grasp fold (Domain)
 [1-94]  9.7e-27 G3DSA:3.40.50.20
G3DSA:3.40.50.20   no description
IPR016185 PreATP-grasp-like fold (Domain)
 [1-102]  1.7e-31 SSF52440
SSF52440   PreATP-grasp domain
IPR020559 Phosphoribosylglycinamide synthetase, conserved site (Conserved_site)
 [285-292]  PS00184
PS00184   GARS
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 426 amino acids
molecular mass 44,339.17 Da
pI 4.36
aa composition
AlaValLeuIlePheTrpProMetGlySer
15
(64aa)
9.6
(41aa)
10.3
(44aa)
4.9
(21aa)
2.1
(9aa)
0.9
(4aa)
6.3
(27aa)
0.9
(4aa)
10.6
(45aa)
3.1
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(22aa)
0.9
(4aa)
3.1
(13aa)
1.9
(8aa)
1.6
(7aa)
2.1
(9aa)
2.1
(9aa)
5.4
(23aa)
7.5
(32aa)
6.3
(27aa)

open this sectionSequence