CDS Information : DEFDS_0007

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Deferribacter desulfuricans SSM1T (= NBRC 101012T) Chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Deferribacter desulfuricans SSM1T (= NBRC 101012T)
Replicon	Chromosome
Start / Stop / Direction	9,248 / 11,119 / +
Location	9248..11119
Type	CDS
Length	1,872 bp (623 aa)

Product	glucose inhibited division protein A
Gene name
Functional category	Cellular processes and signaling - [D] Cell cycle control, cell division, chromosome partitioning
EC number
Note	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=0 MNMG_GEOSL tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Glucose-inhibited division protein A Alignment 2 E=0 B5YJL3_THEYD Glucose-inhibited division protein A Alignment 3 E=0 MNMG_PELPD tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Glucose-inhibited division protein A Alignment 4 E=0 B5EGX7_GEOBB Glucose inhibited division protein A Alignment 5 E=0 MNMG_GEOMG tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Glucose-inhibited division protein A Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002218 Glucose-inhibited division protein A (Family) PTHR11806   GLUCOSE INHIBITED DIVISION PROTEIN A PS01280   GIDA_1 PS01281   GIDA_2 PD003738   Q73GE7_WOLPM_Q73GE7; PF01134   GIDA IPR004416 Glucose-inhibited division protein A subfamily (Family) TIGR00136   gidA: tRNA uridine 5-carboxymethylaminometh IPR020595 Glucose-inhibited division protein A-related, conserved site (Conserved_site) PS01280   GIDA_1 PS01281   GIDA_2
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	623 amino acids
molecular mass	70,747.27 Da
pI	8.61
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.4 (40aa) 7.1 (44aa) 8 (50aa) 8.3 (52aa) 4 (25aa) 0.2 (1aa) 4.2 (26aa) 2.1 (13aa) 7.1 (44aa) 5.1 (32aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.9 (24aa) 0.6 (4aa) 4.7 (29aa) 2.7 (17aa) 4.8 (30aa) 8.8 (55aa) 1.3 (8aa) 6.3 (39aa) 5.6 (35aa) 8.8 (55aa)

>DEFDS_0007 glucose inhibited division protein A
ATGAATCTTATTTATGATAAAACTTATGATGTTATTGTTGTTGGTGCTGGCCATGCAGGT
TGTGAGGCAGCATTAGCTGCTGCCAGAATGGGAGCGAAAACCTTATTAATAACAATTTAT
GTAGAAACTATCGCCCAAATGAGTTGTAATCCAGCTATTGGTGGTCTTGCTAAAGGGAAT
ATTGTAAAAGATTTGGACGCTCTTGGCGGAGAAATGGCTAAAAATATAGATGAAACAGGT
ATACAGTTTAAGGTTTTAAATAAAAAGAAGGGGCCTGCGGTTAGAAGCTCGAGAGCACAA
GCTGATAAAAAGTTGTATAGAGAAAGAATGATTTCTGTTTTGATGGATCAAGAAAATTTG
GATGTTAAACAGGGGGTTGTTACTGATATTGTTGTTGAAAATGATATAGTAAAAGGGGTT
GTTGTAGATTACGGGCTTTATTTTAAATCAGATAAAGTTATTCTTACAACAGGTACATTT
TTAAATGGACTCATACATATTGGAGATAAAAGGTATCCTGCAGGGAGAGCAAATGAGTTT
GCTTCTGTAGATCTTGCTGAGGCTTTAAAAAGGTATTTTCCGCTTGAAAGACTTAAAACA
GGGACACCTGCAAGACTTGATGCAGACACTATAAATTTTTCTGTTTTAGAAGAACAGCCA
GGAGATAATGAACCGAAAATGTTTTCTTTCGAAAGCAAAGGGCCTAAATTACCTCAGGTA
TCATGTTATATTACGTATACTAACGAAAAAACTCACAGTATCATAAATGAAAATATGCAT
AGGTCACCTTTATATGCAGGTGTTATAAAAGGGATAGGACCAAGATACTGCCCATCAATC
GAAGATAAAGTAAAAAAATTTCCAGATAAAAGTAGGCATCAGATATTTTTAGAGCCAGAA
GGGCTTGATAGTAGAGAAATATATGCAAATGGTTTTTCCTCTTCTTTGCCTATAGATGTT
CAGATAGCTATGTATAGAAGTGTAAAAGGGTTAGAAAATGTCGAGTTTGTGAGACCTGCT
TATGCAATTGAGTATGATTTTGTACAACCAACAAATCTTTATCCAACGCTAGAAACTAAA
AAGATAAAAGGGTTGTATTTTGCTGGACAAATTAATGGAACCACAGGTTATGAGGAAGCT
GCTGGTCAAGGATTTGTTGCTGCTGTTAATGCTGTCCTTTCTTATGATAATAAAGAGTTT
ATTTTAGGAAGGGATGAGAGTTATATTGGGGTTATGATAGATGATTTGGTAACTAAAGGG
GTGGATGAGCCATACAGGGTTTTTCATTCAAGGAGTGAATACAGACTGCTGCTAAGGGAG
GATAATGCAGAGTTTAGATTGATTTCGAAAGGGTATGACCTGGGGCTTATTAGAAAAAGT
AGGTATGAAAGATTTTTGAGAGAAAAAGAGATGTTTGAAAAAGAGATGAAAAGGCTTGAT
GAGATCAAAGTAAATCCTGATAAACATAATCAAGATAAACTTTCTAAGTATAATATTAAA
ATAAATAATCCGGTATCTTTAAAAGAGCTTTTACGCAGGCCAGAAGTTAGTTATGAAATA
ATAAAAGAGTTTTGGGGTGGTGTTGAAAATGAAAGAGTTGCTGAACAAATAGAAATTTCA
GTTAAATATGAAGGTTATATAGCCAAGCAGATGCAAGAAGTTGAACGGTTTAGAAAGATA
GAAAACGTTAGAATACCTGATACTTTAGATTTTTCAAAAATAAAGGGGCTCAGGAGAGAG
TTTATAGAGAAATTTGAAAGAATAAAACCAAAAACGCTTGGGCAAGCATCAAGAATACCT
GGTGTTACACCTGCAGCAATATCATTACTTCATATTTATATAGAAGATGAAAAGCGGAAA
AGAAATATTTAA


>DEFDS_0007 glucose inhibited division protein A
MNLIYDKTYDVIVVGAGHAGCEAALAAARMGAKTLLITIYVETIAQMSCNPAIGGLAKGN
IVKDLDALGGEMAKNIDETGIQFKVLNKKKGPAVRSSRAQADKKLYRERMISVLMDQENL
DVKQGVVTDIVVENDIVKGVVVDYGLYFKSDKVILTTGTFLNGLIHIGDKRYPAGRANEF
ASVDLAEALKRYFPLERLKTGTPARLDADTINFSVLEEQPGDNEPKMFSFESKGPKLPQV
SCYITYTNEKTHSIINENMHRSPLYAGVIKGIGPRYCPSIEDKVKKFPDKSRHQIFLEPE
GLDSREIYANGFSSSLPIDVQIAMYRSVKGLENVEFVRPAYAIEYDFVQPTNLYPTLETK
KIKGLYFAGQINGTTGYEEAAGQGFVAAVNAVLSYDNKEFILGRDESYIGVMIDDLVTKG
VDEPYRVFHSRSEYRLLLREDNAEFRLISKGYDLGLIRKSRYERFLREKEMFEKEMKRLD
EIKVNPDKHNQDKLSKYNIKINNPVSLKELLRRPEVSYEIIKEFWGGVENERVAEQIEIS
VKYEGYIAKQMQEVERFRKIENVRIPDTLDFSKIKGLRREFIEKFERIKPKTLGQASRIP
GVTPAAISLLHIYIEDEKRKRNI

NBRC No.	clone name	start	stop	length(bp)
G17-001-001	DD1FE11L00008C12	558	35,753	35,196
G17-001-099	DD1FE11L00014C03	2,225,370	23,008	32,028

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.