CDS Information : DEFDS_0012

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Deferribacter desulfuricans SSM1T (= NBRC 101012T) Chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Deferribacter desulfuricans SSM1T (= NBRC 101012T)
Replicon	Chromosome
Start / Stop / Direction	14,944 / 16,095 / +
Location	14944..16095
Type	CDS
Length	1,152 bp (383 aa)

Product	hypothetical protein
Gene name
Functional category	Poorly characterized - [S] Function unknown
EC number
Note	Putative two-component sensor histidine kinase (GAF)
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=3e-32 B9K8X5_THENE Sensor protein Alignment 2 E=1e-30 A9FGA1_SORC5 Sensor protein Alignment 3 E=5e-30 B5EED7_GEOBB Integral membrane sensor signal transduction histidine kinase Alignment 4 E=2e-29 Q39VU4_GEOMG Sensor protein Alignment 5 E=3e-29 A7K3P9_9VIBR Sensor protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003018 GAF (Domain) PF01590   GAF SM00065   no description IPR003594 ATP-binding region, ATPase-like (Domain) PF02518   HATPase_c SSF55874   ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase G3DSA:3.30.565.10   no description SM00387   no description IPR003661 Histidine kinase A, N-terminal (Domain) PF00512   HisKA SM00388   no description IPR005467 Histidine kinase (Domain) PS50109   HIS_KIN
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	383 amino acids
molecular mass	43,373.38 Da
pI	4.86
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 4.2 (16aa) 6.8 (26aa) 9.4 (36aa) 12.3 (47aa) 4.7 (18aa) 0 (0aa) 1 (4aa) 3.4 (13aa) 6.5 (25aa) 6 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.7 (14aa) 0.5 (2aa) 5.7 (22aa) 0.8 (3aa) 3.7 (14aa) 11.5 (44aa) 1.3 (5aa) 1.8 (7aa) 7.6 (29aa) 9.1 (35aa)

>DEFDS_0012 hypothetical protein
TTGATGAAAAATAAAGATTTTCTTGATATTTTAGTAGAAATTTCTGAAATGATGAATGAC
ATCACTGATATCGATTCTTTGCTTAGTAGAATAGTGGAGTTGGCAAAGGGTTATCTAAAT
GTTAGTAGAGTTTCAGTTATGCTAAAAGAGGGAGATTTTCTTAAAATAGTAGCTGGAGCA
GGATTAAACTTTGATTATAAAGATTTTAAAATCAAGGTTGGTGAAGGTGCAAGTGGTTTG
GTTGCAAAAACTGGTGAGACATTAGTTGTAAATGAATCTAAAAATATGAATAGTGAGTTT
GGTTATCAGGCAAAATCATATATGTGTATCCCTTTGAAAGTAAAAGAAAATATTATTGGC
GTGTTAAATATTACAGACAAAGTAAATGACTATTTTGATGAAAATGATGTTAAGATTGGA
AAATATATGGCATCCCAGTGCGCATTAGCTATAGAGAGATATAATCTTTATGAAGAAGAA
AAAAAGAGTGAAAAATTAAAACTTATTGGGAAGTTTACTTCATCTATAGCTCATGATATA
AAAAATTTATTGAATATTATTCAGGGGTATGTGGAGCTACTTGAAATAGAGTTGGATGAT
CACCCTGCTTTAAAAGAATACATTGATTCTATTGTTACAGAGCTAAAAATGATACATGGT
CTTACACTAGATATTTTAGACTTTTCCAAAAAAAATATTATGCTTAGAAGAGATGAAGTA
AGGTTAAGCGAATTAATTTCAGAGATTAAAAAACACGCAGACATTATGATAAAATTTACT
GATATAGATTTTACTATTAGTTATGAAAATGATACAAGTTTATTTATTGATAAAGAGAAG
ATATTTAGGGTTTTTATGAACCTGATTAATAATTCTATTGAAGCTCTAAATGGAAAAGGT
GTTATTAAAATAGATGCAAAAGTTATGGATGAATATGTTGTTTTTGAAGTTTACGATAAT
GGTATTGGTATTAAAAAGGAAAATATCGATAAAATATTTGATCCATTTTTTACTTCTGGA
AAAATAAAGGGGACTGGTCTTGGGTTGGCTGTGACAAAAGAGATTATTATTGCTCATGGT
GGTGAAATATCGGTGGAATCAGAGGAAGGGGAGTATACCAAATTTATTATAAAACTTCCG
GTTAAGAAATGA


>DEFDS_0012 hypothetical protein
MMKNKDFLDILVEISEMMNDITDIDSLLSRIVELAKGYLNVSRVSVMLKEGDFLKIVAGA
GLNFDYKDFKIKVGEGASGLVAKTGETLVVNESKNMNSEFGYQAKSYMCIPLKVKENIIG
VLNITDKVNDYFDENDVKIGKYMASQCALAIERYNLYEEEKKSEKLKLIGKFTSSIAHDI
KNLLNIIQGYVELLEIELDDHPALKEYIDSIVTELKMIHGLTLDILDFSKKNIMLRRDEV
RLSELISEIKKHADIMIKFTDIDFTISYENDTSLFIDKEKIFRVFMNLINNSIEALNGKG
VIKIDAKVMDEYVVFEVYDNGIGIKKENIDKIFDPFFTSGKIKGTGLGLAVTKEIIIAHG
GEISVESEEGEYTKFIIKLPVKK

NBRC No.	clone name	start	stop	length(bp)
G17-001-001	DD1FE11L00008C12	558	35,753	35,196
G17-001-099	DD1FE11L00014C03	2,225,370	23,008	32,028

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.