CDS Information : DEFDS_0028

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Deferribacter desulfuricans SSM1T (= NBRC 101012T) Chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Deferribacter desulfuricans SSM1T (= NBRC 101012T)
Replicon	Chromosome
Start / Stop / Direction	37,219 / 36,557 / -
Location	complement(36557..37219)
Type	CDS
Length	663 bp (220 aa)

Product	cobalt ABC transporter, ATP-binding protein
Gene name	cbiO
Functional category	Metabolism - [P] Inorganic ion transport and metabolism
EC number
Note	TC 3.A.1. The ATP-binding Cassette (ABC) Superfamily
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=2e-59 A7I0T7_CAMHC Cobalt import ATP-binding protein CbiO Alignment 2 E=1e-57 A0RME6_CAMFF Cobalt transport ATP-binding protein CbiO Alignment 3 E=2e-55 A7H0G5_CAMC5 Ubiquinol--cytochrome c reductase, cytochrome c1 subunit Alignment 4 E=3e-46 B5YI82_THEYD Cobalt import ATP-binding protein CbiO Alignment 5 E=3e-45 A8ETC4_ARCB4 Cobalt ABC transporter, ATP-binding protein, putative Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003439 ABC transporter related (Domain) PS00211   ABC_TRANSPORTER_1 PF00005   ABC_tran PD000006   Q8G838_BIFLO_Q8G838; PS50893   ABC_TRANSPORTER_2 IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	220 amino acids
molecular mass	24,865.09 Da
pI	9.05
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 3.2 (7aa) 5 (11aa) 12.7 (28aa) 11.8 (26aa) 5 (11aa) 0 (0aa) 2.3 (5aa) 1.4 (3aa) 6.4 (14aa) 5.5 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.1 (9aa) 0.9 (2aa) 7.3 (16aa) 3.2 (7aa) 1.4 (3aa) 12.7 (28aa) 3.2 (7aa) 1.4 (3aa) 5 (11aa) 7.7 (17aa)

>DEFDS_0028 cobalt ABC transporter, ATP-binding protein
ATGAGCTGCTCGTTAAAATTAACAAATATAAGTTATAAAATTAATGATGAATATCTTTTT
GAAAACATAAATTTTCATCTAAAACATAAAGATAAAATAGCAATTATTGGGCCAAACGGT
GTAGGGAAAACAACTCTTTTAAAAATAATTTCTGGGCTTAAAAAAGCTGAAAGTGGCGAG
ATAGAAATTTTTCATGAAAAAATAGTTACCGAAAAAGATTTTGAACGAGCCAGAAAAAAA
ATCGGATTTCTTTTTCAAAATCCTGATGACCAACTGATTCTGCCAAATGTAAAAGATGAT
ATTGCTTTCGGCCTATTTAATCTAGGCTTTGTCAAAAATACAATACAACAAAAAGTAGAA
AATATGATAAATAAGTTGCAAATAAACCATCTATCTAACAAAATTACTTTTAAACTCTCA
GGTGGTGAAAAAAAACTAGTGGCTTTAGCAGGTATTTTAGTATGCGAACCTGACATCTTA
TTGTTAGATGAACCTTCAGCTGGACTCGATAATAAAAGCATGGAAAGAATAGGGGAGATT
ATCAAGGAGTTAGATAAAACAGTCTTGATAGTTTCTCATAATTTAGAGTTTGTAAAACAA
ATCACCAGTAAGATCTACCATCTTACTCAATCTGGCTTACATGAAGTAAAAAATTTAAAA
TGA


>DEFDS_0028 cobalt ABC transporter, ATP-binding protein
MSCSLKLTNISYKINDEYLFENINFHLKHKDKIAIIGPNGVGKTTLLKIISGLKKAESGE
IEIFHEKIVTEKDFERARKKIGFLFQNPDDQLILPNVKDDIAFGLFNLGFVKNTIQQKVE
NMINKLQINHLSNKITFKLSGGEKKLVALAGILVCEPDILLLDEPSAGLDNKSMERIGEI
IKELDKTVLIVSHNLEFVKQITSKIYHLTQSGLHEVKNLK

NBRC No.	clone name	start	stop	length(bp)
G17-001-002	DD1FE11L00020A05	22,394	66,459	44,066

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.