CDS Information : DEFDS_0029

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Deferribacter desulfuricans SSM1T (= NBRC 101012T) Chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Deferribacter desulfuricans SSM1T (= NBRC 101012T)
Replicon	Chromosome
Start / Stop / Direction	37,869 / 37,216 / -
Location	complement(37216..37869)
Type	CDS
Length	654 bp (217 aa)

Product	cobalt ABC transporter, permease
Gene name	cbiQ
Functional category	Metabolism - [P] Inorganic ion transport and metabolism
EC number
Note	TC 3.A.1. The ATP-binding Cassette (ABC) Superfamily
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=3e-15 A7H0G6_CAMC5 Putative uncharacterized protein Alignment 2 E=3e-14 A0RME5_CAMFF Cobalt ABC transporter CbiQ, permease subunit, putative Alignment 3 E=6e-14 A7I0T8_CAMHC Putative cobalt ABC transporter CbiQ, permease subunit Alignment 4 E=6e-10 A8ETC3_ARCB4 Cobalt ABC transporter, permease protein, putative Alignment 5 E=6e-10 Q313A3_DESDG Cobalt ABC transporter, permease protein, putative Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003339 Cobalt transport protein (Family) PF02361   CbiQ
SignalP	No significant hit
TMHMM	Transmembrane 6
SOSUI	No significant hit

size of protein	217 amino acids
molecular mass	25,607.27 Da
pI	10.4
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 3.7 (8aa) 1.4 (3aa) 19.4 (42aa) 15.2 (33aa) 10.6 (23aa) 0.5 (1aa) 1.4 (3aa) 3.2 (7aa) 2.3 (5aa) 5.1 (11aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.1 (11aa) 0.9 (2aa) 7.8 (17aa) 0.5 (1aa) 4.1 (9aa) 9.7 (21aa) 1.8 (4aa) 2.3 (5aa) 2.8 (6aa) 2.3 (5aa)

>DEFDS_0029 cobalt ABC transporter, permease
ATGAATATTAACTTCTTGCTACTTTCTTTAATATTTTATGCTTTCACATTATCTTTTACA
AAATCATTTAATTACTTACATTTACTACCTATTCTATTACTAATATTTTTCAATTTTGAA
AAACTAAACATGAAAAAGTTACTGATAAATCTCATCAAGTTAAATTTATTCATCATTATG
ATATCCTTATCAGTTATCCTTTTCCACAAAGATTATAAAACAGCTATGTTGTTATTTTAT
AGAGTAAATCTTATTTTAATTTTTAACCTGATTATAATAAATAGCTTTACGAACGAAGAA
ATTTTTATCAACTTAATACATCTTAAAATACCTTGGAAAATAAAATCGATCTTAATATTT
TCATTCAAATATATTGATATTTTATTAAAGGAAAAAGAAATACTGGATGATGCCCTTAAA
ATGAGGCATTTCAAAGGGAAAACAAACCTTTTTTCATATAAGATTATCGCTTTTATTTTA
GGTGCATTAATCAATAGGACAATAAATAAAGCAAATCTTCTCCAGGATGCTTTGACAATG
AGATATTTTAATGGAAAATTTTCTACACTAACACTATGTAAATCAGGTTGTAAAGATTAT
ATAATTATGCTTGCAACATTCACAATATTTGTTTACGGTTTATTACCAAGATGA


>DEFDS_0029 cobalt ABC transporter, permease
MNINFLLLSLIFYAFTLSFTKSFNYLHLLPILLLIFFNFEKLNMKKLLINLIKLNLFIIM
ISLSVILFHKDYKTAMLLFYRVNLILIFNLIIINSFTNEEIFINLIHLKIPWKIKSILIF
SFKYIDILLKEKEILDDALKMRHFKGKTNLFSYKIIAFILGALINRTINKANLLQDALTM
RYFNGKFSTLTLCKSGCKDYIIMLATFTIFVYGLLPR

NBRC No.	clone name	start	stop	length(bp)
G17-001-002	DD1FE11L00020A05	22,394	66,459	44,066

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.