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CDS Information : DMR_01580

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 158,216 / 158,881 / +
Location 158216..158881
Type CDS
Length 666 bp (221 aa)

close this sectionAnnotation

Product putative 4'-phosphopantetheinyl transferase
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR008278

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-15A9G8H9_METNOPhosphopantetheinyl transferase-like proteinAlignment
2E=8e-13A1ZLW2_9SPHI4'-phosphopantetheinyl transferase gsp, putativeAlignment
3E=1e-12A9EAE9_9FLAO4'-phosphopantetheinyl transferaseAlignment
4E=6e-12A9EDA6_9FLAOPutative phosphopantetheinyl transferaseAlignment
5E=6e-12Q6VMI1_STRAMPutative 4'-phosphopantetheinyl transferaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR008278 4'-phosphopantetheinyl transferase (Domain)
 [108-168]  6.7e-06 PF01648
PF01648   ACPS
 [6-112]  7.2e-11 SSF56214 [106-215]  6.2e-14 SSF56214
SSF56214   4'-phosphopantetheinyl transferase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 221 amino acids
molecular mass 23,989.69 Da
pI 4.9
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.9
(24aa)
7.7
(17aa)
14
(31aa)
3.6
(8aa)
1.4
(3aa)
3.6
(8aa)
6.3
(14aa)
3.2
(7aa)
9.5
(21aa)
5.9
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.6
(8aa)
2.3
(5aa)
2.7
(6aa)
2.7
(6aa)
0.5
(1aa)
0.9
(2aa)
0.9
(2aa)
8.6
(19aa)
5.4
(12aa)
6.3
(14aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-006 DM1GRC2E00016C05 126,856 160,653 33,798
G11-001-007 DM1GRC2E00020G06 149,466 190,129 40,664

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.