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CDS Information : DMR_02420

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 258,343 / 258,828 / +
Location 258343..258828
Type CDS
Length 486 bp (161 aa)

close this sectionAnnotation

Product cytochrome c family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011031

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=4e-43Q72DK7_DESVHCytochrome c family proteinAlignment
2E=4e-43A1VF62_DESVVCytochrome c family proteinAlignment
3E=4e-40A1VFR2_DESVVCytochrome c family protein precursorAlignment
4E=4e-40Q72E77_DESVHCytochrome c family proteinAlignment
5E=9e-38Q30XE3_DESDGCytochrome c family protein precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011031 Multihaem cytochrome (Domain)
 [38-147]  8.449 PS51008
PS51008   MULTIHEME_CYTC
IPR012282 Cytochrome c region (Domain)
 [5-47]  0.0015 SSF46626
SSF46626   Cytochrome c
IPR023155 Cytochrome c-552/4 (Domain)
 [33-142]  1.5e-20 G3DSA:1.10.710.10
G3DSA:1.10.710.10   no description
SignalP
 [1-26]  1 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI
 [2-23]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 161 amino acids
molecular mass 16,817.14 Da
pI 8.21
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.5
(25aa)
4.3
(7aa)
7.5
(12aa)
2.5
(4aa)
2.5
(4aa)
0.6
(1aa)
8.1
(13aa)
1.2
(2aa)
11.2
(18aa)
5.6
(9aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(11aa)
5
(8aa)
0.6
(1aa)
1.9
(3aa)
4.3
(7aa)
5
(8aa)
4.3
(7aa)
5
(8aa)
3.7
(6aa)
4.3
(7aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-010 DM1GRC2E00037C06 239,670 279,698 40,029
G11-001-011 DM1GRC2E00016H04 254,674 287,618 32,945

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.