CDS Information : DMR_02850

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Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	311,630 / 309,975 / -
Location	complement(309975..311630)
Type	CDS
Length	1,656 bp (551 aa)

Product	putative chemotaxis protein CheA
Gene name
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number
Note
KEGG pathway	map:02030 KO:K03407
Sequence feature
References	Family/Domain:IPR005467 Family/Domain:IPR008207 Family/Domain:IPR002545 Family/Domain:IPR003594 Uniprot:P07363 Pubmed:2068106,1326408

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=2e-88 A7H814_ANADF CheA signal transduction histidine kinase Alignment 2 E=6e-88 A9FWB6_SORC5 Putative chemotaxis protein CheA Alignment 3 E=7e-87 Q30ZJ3_DESDG CheA signal transduction histidine kinase Alignment 4 E=9e-87 B0IT33_RHILT CheA signal transduction histidine kinase Alignment 5 E=6e-86 A8VN77_9DELT Putative CheA signal transduction histidine kinase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002545 CheW-like protein (Domain) PS50851   CHEW SSF50341   CheW-like SM00260   no description PF01584   CheW IPR003594 ATP-binding region, ATPase-like (Domain) G3DSA:3.30.565.10   no description PF02518   HATPase_c SSF55874   ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase SM00387   no description IPR004105 Signal transducing histidine kinase, homodimeric (Domain) PF02895   H-kinase_dim IPR005467 Histidine kinase (Domain) PS50109   HIS_KIN IPR008207 Hpt (Domain) PS50894   HPT SM00073   no description G3DSA:1.20.120.160   no description PF01627   Hpt SSF47226   Histidine-containing phosphotransfer domain, HPT domain IPR009082 Histidine kinase, homodimeric (Domain) SSF47384   Homodimeric domain of signal transducing histidine kinase
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	551 amino acids
molecular mass	58,399.70 Da
pI	4.83
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.3 (90aa) 8 (44aa) 13.1 (72aa) 4 (22aa) 1.8 (10aa) 0.4 (2aa) 4.4 (24aa) 1.6 (9aa) 9.3 (51aa) 3.4 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.3 (18aa) 1.1 (6aa) 1.5 (8aa) 2.2 (12aa) 0.9 (5aa) 2.5 (14aa) 1.8 (10aa) 9.1 (50aa) 7.6 (42aa) 7.8 (43aa)

>DMR_02850 putative chemotaxis protein CheA
ATGGCCGACGACGACACCCTCTACGAACTTTTTGCCGAAAGCTGCCTGGAGCAGCTGCGC
GGCATCGAAACGGCCATCCTCGACCTGGAGTCCGCTCCGGCCGGCGAATTGGCCGGCCGG
GTGGACGCCATCTTCCGGGCCGCCCACACCATAAAGGGCGACGCCGGAGCCATCGGCGCG
GCCAATCTCGCCGCCCTGGCCCATGGGGCCGAATCCGTGCTGGAACTCATGCGCCGGGAC
GGACGGCCGGCCGACCGCCAGTTCGTGGGTGAACTGCTCGGGGCCTTCGACGACATGCGG
GCCATGGCCGAAAACGCCCGAAACGACGCCTCCCGTGACATTGCCGAGCGTCTGGCCCGG
CTGGCCGCCCTGGTCCAAAACACGCCGTCCGCCGCCGAACAGCCTGCCGAGTCAGGTGCC
GAACCCGAGGCCGAGCCGGAAGCCGAGGTCGACACCGACAAAGCTCCGGGGCCGGCCTGG
GCCGATGAACGCATCCGCAAGCTGGCCATTCCGGCCCTGGAACTCGACGTGCTGGTGGAT
CGCGTAGGCGAACTCGGCATCGCCCAGGCCCGGCTCTCCGGCCTGGCCCTGCGCCGGGCC
GACCTGGAACTTCGGGGCGTGGCCGAGGAGGTCGAACGGCTCTCGGCCCTGCTGCGCGAC
CAGGTGCTGGGGCTGCGACTGCTGCCCATCAAGGTGAGCTTTCCCAAGTACCGCCGGCTG
GTGCGCGACGCCTGCGCCAGCCTGGGCAAGGACGCCGCCCTGGTCATGGAAGGCGAGAAC
ACCAAACTCGACAAGGCCGTCATCGAACAGTTAAACGCCCCCTGCATCCACCTGCTGCGA
AACGCCGTGGACCACGGCGTCGAACCGGCCGAGGTGCGCGCGGCCCTGGGCAAGCCGCGC
CAGGGGACCGTCACCCTGTCGGCCCGCCAGGAAGGCTCCGATGTGGTCATCGCCGTGCGC
GACGACGGCGGCGGCATCGACGGCCGCAAGCTCTGGGCCAAGGCCGTGGCCGCCGGCCGC
ATCGACGCCGGCCGCCCCTTTGACCCGGCCGCCGCCCTGGAACTTATTTTCCTGCCCGGC
CTGTCCACGGCCGAGGCCGTAAGCGACGTCTCGGGCCGGGGCGTGGGCATGGACGCCGTG
CGCGAGGCCATCGCCGCCCTGCGCGGCCGCCTGGACGTCCAAAGCGCTCCGGGCGCGGGC
AGCACCTTCACCATCCGCCTGCCCGTGTCCCTGGCCATCATCGACTGCCTGGAAGTCCGC
TGCGCCGGCGAGGCCTACTACCTCCACCTGGACTACGTGGAGGAATGCCTGGAGCTGCCG
GCGACGGCCGCCCTGGCCGGAACCACGGGTATCATGGAACTGCGCGGCCTCCCCATGCCG
CTGTTGTCCCTGCGCCGCTTTTTCGACCTCGACCGGGTCGAGGCCCACACGCCCCACGTG
GTCACCGTGCGCCGCGACGGCGGCCGGGCCGGTCTGGTGGTGGACGCCGTCATCGGCCGC
AAACAGGCCGTGCTCAAGCACCTTGGCCGAGCCCTGGGCCGGGTCGAGGGCGTCCTTGGC
GGCACCGTCACCGAGGCCGGCGACATGGCCCTGGTCCTGGACGTGCCGGGACTGCTGGCC
GCCGCCAAGCGGCAACACGACGCCGACAACCATTAA


>DMR_02850 putative chemotaxis protein CheA
MADDDTLYELFAESCLEQLRGIETAILDLESAPAGELAGRVDAIFRAAHTIKGDAGAIGA
ANLAALAHGAESVLELMRRDGRPADRQFVGELLGAFDDMRAMAENARNDASRDIAERLAR
LAALVQNTPSAAEQPAESGAEPEAEPEAEVDTDKAPGPAWADERIRKLAIPALELDVLVD
RVGELGIAQARLSGLALRRADLELRGVAEEVERLSALLRDQVLGLRLLPIKVSFPKYRRL
VRDACASLGKDAALVMEGENTKLDKAVIEQLNAPCIHLLRNAVDHGVEPAEVRAALGKPR
QGTVTLSARQEGSDVVIAVRDDGGGIDGRKLWAKAVAAGRIDAGRPFDPAAALELIFLPG
LSTAEAVSDVSGRGVGMDAVREAIAALRGRLDVQSAPGAGSTFTIRLPVSLAIIDCLEVR
CAGEAYYLHLDYVEECLELPATAALAGTTGIMELRGLPMPLLSLRRFFDLDRVEAHTPHV
VTVRRDGGRAGLVVDAVIGRKQAVLKHLGRALGRVEGVLGGTVTEAGDMALVLDVPGLLA
AAKRQHDADNH

NBRC No.	clone name	start	stop	length(bp)
G11-001-012	DM1GRC2E00010G04	280,632	315,958	35,327
G11-001-013	DM1GRC2E00011A08	305,464	345,867	40,404

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.