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CDS Information : DMR_03610

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 418,615 / 419,778 / +
Location 418615..419778
Type CDS
Length 1,164 bp (387 aa)

close this sectionAnnotation

Product sulfite reductase beta subunit
Gene name
Functional category Metabolism
- Energy Metabolism
EC number 1.8.99.3
Note Belongs to the Sulfite reductase, dissimilatory-type beta subunit family (IPR011808).
KEGG pathway
Sequence feature
References Family/Domain:IPR011808
Uniprot:P45575 Pubmed:7887608

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q315R8_DESDGSulfite reductase, dissimilatory-type beta subunitAlignment
2E=0A1VGI1_DESVVSulfite reductase, dissimilatory-type beta subunitAlignment
3E=0DSVB_DESVHSulfite reductase, dissimilatory-type subunit beta
Desulfoviridin subunit beta
Hydrogensulfite reductase subunit beta
Alignment
4E=1e-177Q9AIK3_BILWADissimilatory sulfite reductase BAlignment
5E=1e-177A9J5U6_9DELTSulfite reductase, dissimilatory-type beta subunitAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Conserved_site)
 [258-269]  PS00198
PS00198   4FE4S_FER_1
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain)
 [258-269]  PS00198
PS00198   4FE4S_FER_1
 [251-274]  0.00012 PF00037
PF00037   Fer4
IPR005117 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like (Domain)
 [53-121]  1.8e-22 PF03460
PF03460   NIR_SIR_ferr
IPR006067 Nitrite and sulphite reductase 4Fe-4S region (Domain)
 [135-361]  2.6e-54 PF01077
PF01077   NIR_SIR
IPR011255 Nitrite/sulfite reductase, flavoprotein alpha-component, domains 1 and 3 (Domain)
 [64-126]  1.1e-10 SSF55124
SSF55124   Sulfite reductase, domains 1 and 3
IPR011808 Sulfite reductase, dissimilatory-type beta subunit (Family)
 [33-381]  3.9e-203 TIGR02066
TIGR02066   dsrB: sulfite reductase, dissimilatory-type
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain)
 [209-241]  6.164 PS51379 [249-278]  8.542 PS51379
PS51379   4FE4S_FER_2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 387 amino acids
molecular mass 43,037.83 Da
pI 7.63
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(31aa)
9
(35aa)
4.7
(18aa)
6.5
(25aa)
4.4
(17aa)
1.3
(5aa)
5.9
(23aa)
3.9
(15aa)
7.8
(30aa)
4.7
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(20aa)
4.1
(16aa)
3.4
(13aa)
1.8
(7aa)
3.1
(12aa)
6.5
(25aa)
3.9
(15aa)
4.9
(19aa)
4.1
(16aa)
7
(27aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-016 DM1GRC2E00009D06 381,482 419,900 38,419
G11-001-017 DM1GRC2E00007A05 388,613 424,807 36,195

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.