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CDS Information : DMR_05390

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 602,929 / 603,420 / +
Location 602929..603420
Type CDS
Length 492 bp (163 aa)

close this sectionAnnotation

Product adenylylsulfate reductase beta subunit
Gene name aprB
Functional category Metabolism
- Energy Metabolism
EC number 1.8.99.2
Note Belongs to the Adenylylsulfate reductase, beta subunit family (IPR011802).
KEGG pathway map:00920 KO:K00395
Sequence feature
References Family/Domain:IPR011802
Uniprot:Q59339 Pubmed:8081492

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-86Q59338_DESVUAdenylylsulphate reductase beta-subunitAlignment
2E=3e-86A1VFD7_DESVVAdenylylsulfate reductase, beta subunitAlignment
3E=3e-86Q72DT3_DESVHAdenylylsulphate reductase, beta subunitAlignment
4E=5e-81Q313I6_DESDGAdenylylsulfate reductase, beta subunitAlignment
5E=2e-78Q9L768_DESDEAdenylylsulfate reductase beta subunitAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain)
 [47-58]  PS00198
PS00198   4FE4S_FER_1
 [3-31]  0.011 PF00037 [40-63]  3.8e-05 PF00037
PF00037   Fer4
IPR011802 Adenylylsulfate reductase, beta subunit (Family)
 [1-132]  2.4e-100 TIGR02060
TIGR02060   aprB: adenylylsulfate reductase, beta subun
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain)
 [1-35]  8.256 PS51379 [38-67]  8.777 PS51379
PS51379   4FE4S_FER_2
IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (Conserved_site)
 [47-58]  PS00198
PS00198   4FE4S_FER_1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 163 amino acids
molecular mass 17,967.79 Da
pI 5
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.4
(12aa)
3.7
(6aa)
4.9
(8aa)
5.5
(9aa)
6.1
(10aa)
1.8
(3aa)
9.2
(15aa)
4.3
(7aa)
8
(13aa)
5.5
(9aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(10aa)
6.1
(10aa)
2.5
(4aa)
2.5
(4aa)
1.8
(3aa)
8.6
(14aa)
0
(0aa)
3.1
(5aa)
6.1
(10aa)
6.7
(11aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-025 DM1GRC2E00013G11 583,739 624,941 41,203

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.