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CDS Information : DMR_05420

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 606,870 / 609,161 / +
Location 606870..609161
Type CDS
Length 2,292 bp (763 aa)

close this sectionAnnotation

Product quinone-interacting membrane-bound oxidoreductase complex subunitB
Gene name qmoB
Functional category Metabolism
- Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:Q7X167 Pubmed:12907302

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q72DT0_DESVHHeterodisulfide reductase, iron-sulfur-binding subunit, putativeAlignment
2E=0A1VFD4_DESVVMethyl-viologen-reducing hydrogenase, delta subunitAlignment
3E=0Q313I3_DESDGHeterodisulfide reductase, iron-sulfur-binding subunit, putativeAlignment
4E=0Q7X166_DESDEQmoBAlignment
5E=0A9J3H4_9DELTMethyl-viologen-reducing hydrogenase, delta subunitAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Conserved_site)
 [556-567]  PS00198 [586-597]  PS00198
PS00198   4FE4S_FER_1
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain)
 [556-567]  PS00198 [586-597]  PS00198
PS00198   4FE4S_FER_1
 [549-572]  6e-06 PF00037 [579-602]  1.1e-05 PF00037
PF00037   Fer4
IPR003813 Methyl-viologen-reducing hydrogenase, delta subunit (Family)
 [630-756]  1.2e-56 PF02662
PF02662   FlpD
IPR003953 Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (Domain)
 [149-184]  3.3e-05 PF00890
PF00890   FAD_binding_2
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain)
 [547-576]  9.726 PS51379 [577-606]  10.003 PS51379
PS51379   4FE4S_FER_2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 763 amino acids
molecular mass 81,808.26 Da
pI 4.95
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.7
(89aa)
8.9
(68aa)
7.6
(58aa)
5.5
(42aa)
2.6
(20aa)
0.7
(5aa)
6.7
(51aa)
3
(23aa)
8.7
(66aa)
5
(38aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(34aa)
2.5
(19aa)
3
(23aa)
2.2
(17aa)
3.7
(28aa)
6.6
(50aa)
0.5
(4aa)
4.2
(32aa)
5.9
(45aa)
6.7
(51aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-025 DM1GRC2E00013G11 583,739 624,941 41,203

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.