CDS Information : DMR_09160

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	1,036,544 / 1,037,455 / +
Location	1036544..1037455
Type	CDS
Length	912 bp (303 aa)

Product	hypothetical protein
Gene name
Functional category	Unclassified - hypothetical protein (prediction only)
EC number
Note	Contains two WD40-like Beta Propeller repeats (IPR011659).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=4e-06 Q1IIZ5_ACIBL Transcriptional regulatory protein-like Alignment 2 E=3e-05 Q01WK9_SOLUE Peptidase S9B, dipeptidylpeptidase IV domain protein precursor Alignment 3 E=8e-05 A9AFQ0_BURM1 Tol-Pal system beta propeller repeat protein TolB precursor Alignment 4 E=8e-05 A2WCD9_9BURK TolB Alignment 5 E=0.0002 Q8RTU1_9PROT Putative uncharacterized protein EBAC000-65D09.41 Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR011042 Six-bladed beta-propeller, TolB-like (Domain) SSF50960   TolB, C-terminal domain G3DSA:2.120.10.30   no description IPR011659 WD40-like Beta Propeller (Repeat) PF07676   PD40
SignalP	Bacteria, Gram-negative
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	303 amino acids
molecular mass	32,619.05 Da
pI	9.11
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.6 (29aa) 4.6 (14aa) 9.9 (30aa) 3.3 (10aa) 5.3 (16aa) 1.3 (4aa) 9.2 (28aa) 2.6 (8aa) 9.2 (28aa) 8.9 (27aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.9 (21aa) 0.7 (2aa) 3 (9aa) 4 (12aa) 1.7 (5aa) 3 (9aa) 2.3 (7aa) 6.3 (19aa) 5 (15aa) 3.3 (10aa)

>DMR_09160 hypothetical protein
ATGGCGCGACGCTGTTTGCTGACCAGTCTTTTGCTCGTTTTCGTGACGACCGCGCCGCTT
CGGGCAGAAGTTGCGATCCCCCCGCTGGTCTACACCCTGGGCGACGCGGTGATGTTCAAG
ACCGGGGGCCAGTCCATAATGCTTGGCCATGGAAGCCAACCTACCCTCTCGCCGGAAGCA
CGCCAGGCTGCCTGGGTAGAACATGGCGACGACCCGGCCCAGGCGCGGCTGATGTTGTGC
GATATCGCCTCCGGCAACGCCAGCATACTGGCCAAGCCCGGCGGGAACCTGCATTCCCCG
AGTTTCTCCCCGGACGGAGGGAACGTCATTTTCGTTCGCCGAACTGAAACCGGTCAGTCT
GAATTGTGGTCCGTACGCCCGGGCGAAAAACCGCGAAAGCTGGCCCAGGCCGGCGGTCTA
GCCGGCGACGACTTCTTCGAGCCTGTGTTCTCGCTGGCCGATGGCCGCATTCTCTACCAC
GACTTGGAATCTCTCTACTCGATGAGCCTAACCGGCCAGAAAAACAACCAAACGCCACTT
AAGAACTTCAATCAAGGGCATACAGGGGCCTTCACCAGCACCGCCCGCTTCATCCCAAGA
CCTAACTCCACGACACTGGCTTTTTCCATGTCAGTCGAAGGCTCCCCGCTTTTCCGCAAG
AAAGTTCCAGATTTGAGCTCCGCGCTATTTCTCTACGACCCTCAATCCAGAAGCGCCTCG
CGACTCACCCCGCATAACATAACTGCCTTTGCCCCAGCCTGGACAACAGATGGCCAGGCT
CTGGTATTCACCGGGTACAGCGACAAGCACGCGGGTACCGCTAGGCCATTTCGAATTTGG
ATGATTCGACCTGGCCAGCCTCCCGTGGACATGGGGCCAGGTGAAGATCCTAGGCCGGCC
TCTGGTCCTTAA


>DMR_09160 hypothetical protein
MARRCLLTSLLLVFVTTAPLRAEVAIPPLVYTLGDAVMFKTGGQSIMLGHGSQPTLSPEA
RQAAWVEHGDDPAQARLMLCDIASGNASILAKPGGNLHSPSFSPDGGNVIFVRRTETGQS
ELWSVRPGEKPRKLAQAGGLAGDDFFEPVFSLADGRILYHDLESLYSMSLTGQKNNQTPL
KNFNQGHTGAFTSTARFIPRPNSTTLAFSMSVEGSPLFRKKVPDLSSALFLYDPQSRSAS
RLTPHNITAFAPAWTTDGQALVFTGYSDKHAGTARPFRIWMIRPGQPPVDMGPGEDPRPA
SGP

NBRC No.	clone name	start	stop	length(bp)
G11-001-043	DM1GRC2E00043H02	1,012,404	1,054,993	42,590

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.