CDS Information : DMR_11850

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	1,307,837 / 1,306,389 / -
Location	complement(1306389..1307837)
Type	CDS
Length	1,449 bp (482 aa)

Product	cobyrinic acid A,C-diamide synthase
Gene name	cbiA
Functional category	Metabolism - Metabolism of Cofactors and Vitamins
EC number
Note
KEGG pathway	map:00860 KO:K03401
Sequence feature
References	Uniprot:P29946 Pubmed:15311923

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-119 A6PPB9_9BACT Cobyrinic acid a,c-diamide synthase Alignment 2 E=1e-116 A9J8A4_9DELT Cobyrinic acid a,c-diamide synthase Alignment 3 E=1e-116 COBB_PELPD Cobyrinic acid A,C-diamide synthase Alignment 4 E=1e-116 Q316K2_DESDG Cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase Glutamine-hydrolysing Alignment 5 E=1e-109 A5G959_GEOUR Cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase Glutamine-hydrolysing Alignment
HAMAP Database:HAMAP:20080521	MF_00027   COBB
InterPro Database:interpro:18.0	IPR002586 Cobyrinic acid a,c-diamide synthase (Domain) PF01656   CbiA IPR004484 Cobyrinic acid a,c-diamide synthase CbiA (Family) TIGR00379   cobB: cobyrinic acid a,c-diamide synthase IPR011698 CobB/CobQ-like glutamine amidotransferase (Domain) PF07685   GATase_3 IPR017929 CobB/CobQ glutamine amidotransferase (Domain) PS51274   GATASE_COBBQ
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	482 amino acids
molecular mass	49,865.21 Da
pI	6.67
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16 (77aa) 7.7 (37aa) 10.2 (49aa) 2.5 (12aa) 4.8 (23aa) 0.6 (3aa) 7.3 (35aa) 2.7 (13aa) 12.7 (61aa) 5.2 (25aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.7 (18aa) 2.1 (10aa) 1.5 (7aa) 0.8 (4aa) 2.3 (11aa) 1.7 (8aa) 3.1 (15aa) 6.2 (30aa) 4.6 (22aa) 4.6 (22aa)

>DMR_11850 cobyrinic acid A,C-diamide synthase
ATGGAGAATAGCGGCATGACGCACGACACTGTGCCGGCGCTGGTCGTGGCCGGCGTCAAA
AGCGGTTGCGGCAAGACCTCGGTGGCCCTGGGCCTCATGCGCGCCCTTGCCCGGCGAGGG
CATATCGTCGCGCCCTTCAAGGCCGGGCCGGACTTCATTGATCCCGGCCACCACGCCCTG
GCCGCCGGCCGGACAAGCCACAACCTCGACGCCTGGATGTGCGGCGCTTCCGGCGTTGCC
GACATCTACAAACGTCAGACGGCCGGGGTCGACGCCGTGGTGGTCGAGGGCGTCATGGGG
CTTTTCGACGGTTTTTCCGCCACCGAGGAAACCGGCAGCACGGCGGAGCTGGCCAAGCTC
CTCGATCTGCCGGTGCTGCTGGTCATCGACGCCGCCTCCATGGCTCGGTCGGTGGCCGCC
CTGGCCCAGGGCTTTATCCGCTTCGACCCACGGCTGCGGTTTTGCGGTGTGGCGCTGAAC
AACGCCGGCAGCCCTTCCCACGCCGCGCTTTTAGCCGAAGCCTTCCGGGCCGCCCTGCCG
GATATTCCGCTGTGGGGCGTGCTGCCCCGTTGTTCGGCCATTGCCGCCCCGTCGCGCCAC
CTGGGCTTGGTCACGGCCGAGGACAGTCCCGATCTCCTGCCCCGCCTCGACGCCCTGGCC
GACTGGCTCGAAGCTTCCCTCGACCTCTCATTTTTTCACGGTATCGAACCCCACCCCCGC
CAGCCCGACCCCACCCCCCATCCAGGGGGTCCGGGGGGGATGATCCCCCCCGGCGGGTCA
CGGGCAGCGCCCGTGCGGGTCCGGGCAGAGCCCGGCATCGCCGTAGGCGTCGCTTGCGAT
AAGGCGTTCTCGTTTTATTATGGCGAGAATTTGCGGTTGCTGGAGGCGGCAGGGGCCAGG
ATCGTGCCGTTTTCGCCCTTGGACGACACCGGGCTACCCGAGGGCGTTGGGGGGCTGTAT
TTCGGCGGCGGCTATCCCGAGCTTCAGGCCGAAAAATTGGCCGCCAACGTGGCCATGCGT
CGGGCGGTGCGGGAATTTTGCGCCGCCGGCCGGCCGGTTTATGCCGAATGCGGCGGGTTT
ATGTACTTGATGGAGTCCTTGGTGGACTTGGGGGGGAAAAGCCATGCCCTGTGCGGCGTT
TTTCCGATGACGGCCGTCATGGGCGGCCGTTTTGCCGCCCTGGGGTATCGGGAGGTGACG
ACCCGGGCGGCCTCGTGCCTGGGACCGGCCGGAACGGTGCTGCGAGGCCATGAGTTCCAC
TATTCGCGGCTGGCCGCCGTGCCGGACGGGTTGCCGGCCATCTACGCCATGACCGGGCGG
GGGGGCTTTGTCGCGGGGCCGGAGGGGTTTGTCGCCGGGCGCACCCTTGGCAGCTACGTG
CATCTCCATTTCGGCAGCAACCCGGCGGCGGCGGCGGCCTTTGTGGCGGCCTGCGCGGAG
GGGACATGA


>DMR_11850 cobyrinic acid A,C-diamide synthase
MENSGMTHDTVPALVVAGVKSGCGKTSVALGLMRALARRGHIVAPFKAGPDFIDPGHHAL
AAGRTSHNLDAWMCGASGVADIYKRQTAGVDAVVVEGVMGLFDGFSATEETGSTAELAKL
LDLPVLLVIDAASMARSVAALAQGFIRFDPRLRFCGVALNNAGSPSHAALLAEAFRAALP
DIPLWGVLPRCSAIAAPSRHLGLVTAEDSPDLLPRLDALADWLEASLDLSFFHGIEPHPR
QPDPTPHPGGPGGMIPPGGSRAAPVRVRAEPGIAVGVACDKAFSFYYGENLRLLEAAGAR
IVPFSPLDDTGLPEGVGGLYFGGGYPELQAEKLAANVAMRRAVREFCAAGRPVYAECGGF
MYLMESLVDLGGKSHALCGVFPMTAVMGGRFAALGYREVTTRAASCLGPAGTVLRGHEFH
YSRLAAVPDGLPAIYAMTGRGGFVAGPEGFVAGRTLGSYVHLHFGSNPAAAAAFVAACAE
GT

NBRC No.	clone name	start	stop	length(bp)
G11-001-050	DM1GRC2E00014E08	1,271,773	1,314,509	42,737
G11-001-051	DM1GRC2E00009G11	1,299,763	1,338,186	38,424

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.