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CDS Information : DMR_12320

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 1,346,128 / 1,346,667 / +
Location 1346128..1346667
Type CDS
Length 540 bp (179 aa)

close this sectionAnnotation

Product 50S ribosomal protein L5
Gene name rplE
Functional category Genetic Information Processing
- Translation
EC number
Note
KEGG pathway map:03010 KO:K02931
Sequence feature
References HAMAP:MF_01333_B

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-77RL5_DESVH50S ribosomal protein L5Alignment
2E=2e-77RL5_DESVV50S ribosomal protein L5Alignment
3E=8e-77RL5_DESDG50S ribosomal protein L5Alignment
4E=3e-73RL5_LAWIP50S ribosomal protein L5Alignment
5E=2e-64A9JFS4_9DELT50S ribosomal protein L5Alignment
HAMAP
Database:HAMAP:20080521
 [1-179]  43.913 MF_01333_B
MF_01333_B   RL5
InterPro
Database:interpro:18.0
IPR002132 Ribosomal protein L5 (Family)
 [1-179]  7.7e-94 PTHR11994
PTHR11994   60S RIBOSOMAL PROTEIN L11-RELATED
 [1-179]  3.7e-67 G3DSA:3.30.1440.10
G3DSA:3.30.1440.10   no description
 [1-179]  2.5e-68 SSF55282
SSF55282   Ribosomal protein L5
 [24-80]  7.2e-24 PF00281
PF00281   Ribosomal_L5
 [57-73]  PS00358
PS00358   RIBOSOMAL_L5
 [84-178]  1.5e-45 PF00673
PF00673   Ribosomal_L5_C
 [1-179]  3e-68 PIRSF002161
PIRSF002161   Ribosomal protein, L5p/L5a/L11e/organellar L5 types
IPR003236 Mitochondrial ribosomal protein L5 (Family)
 [8-178]  2e-54 PD013434
PD013434   RL5_SYNY3_P73308;
IPR020929 Ribosomal protein L5, conserved site (Conserved_site)
 [57-73]  PS00358
PS00358   RIBOSOMAL_L5
IPR022803 Ribosomal protein L5 domain (Domain)
 [1-179]  2.5e-68 SSF55282
SSF55282   Ribosomal protein L5
 [1-179]  3.7e-67 G3DSA:3.30.1440.10
G3DSA:3.30.1440.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 179 amino acids
molecular mass 20,219.61 Da
pI 10.3
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.3
(13aa)
7.8
(14aa)
9.5
(17aa)
5.6
(10aa)
5
(9aa)
0.6
(1aa)
3.9
(7aa)
5
(9aa)
7.8
(14aa)
3.9
(7aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.6
(10aa)
0.6
(1aa)
4.5
(8aa)
1.7
(3aa)
1.7
(3aa)
7.3
(13aa)
1.1
(2aa)
8.9
(16aa)
5
(9aa)
7.3
(13aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-052 DM1GRC2E00043C11 1,325,314 1,365,642 40,329

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.