CDS Information : DMR_12840

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	1,391,656 / 1,392,708 / +
Location	1391656..1392708
Type	CDS
Length	1,053 bp (350 aa)

Product	HMC operon ORF 2 protein
Gene name
Functional category	Metabolism - Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:P33389 Pubmed:8335628

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-122 A8ZUW5_DESOH 4Fe-4S ferredoxin iron-sulfur binding domain protein Alignment 2 E=1e-120 HMC2_DESVH Protein DVU_0535 HMC operon ORF 2 Alignment 3 E=1e-119 A1VG56_DESVV 4Fe-4S ferredoxin, iron-sulfur binding domain protein precursor Alignment 4 E=1e-117 Q315E3_DESDG Putative uncharacterized protein precursor Alignment 5 E=1e-115 Q8VUI2_DESVU ORF2 protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Conserved_site) PS00198   4FE4S_FER_1 IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain) PF00037   Fer4 PS00198   4FE4S_FER_1 IPR006311 Twin-arginine translocation pathway signal (Conserved_site) TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc IPR006311 Twin-arginine translocation pathway signal (Domain) TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc IPR012282 Cytochrome c region (Domain) SSF46626   Cytochrome c IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain) PS51379   4FE4S_FER_2
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 1
SOSUI	Transmembrane 2

size of protein	350 amino acids
molecular mass	37,063.93 Da
pI	8.23
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.3 (57aa) 7.4 (26aa) 7.7 (27aa) 3.4 (12aa) 2.9 (10aa) 0.9 (3aa) 5.7 (20aa) 2 (7aa) 8.9 (31aa) 3.4 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.6 (16aa) 4.6 (16aa) 2.6 (9aa) 1.1 (4aa) 2.6 (9aa) 8.3 (29aa) 0.9 (3aa) 5.1 (18aa) 4.3 (15aa) 7.4 (26aa)

>DMR_12840 HMC operon ORF 2 protein
ATGAAACGTAGACACTTTCTGGGCCTTCTGGGCGCGGCCGGCGTCACCCTGGGCTCCGGC
GCGACGGCCAAGGCCGCGTCGCTTGGCGACGTCAAGGGACTGCCCAACGCGGGCGGCGTG
CTCTTCGACGCCTCGCGCTGCATCGGCTGCCGCAAATGCGAAGCGGCCTGCAACCAGGTC
AACGACCTGCCCAAGCCCGCCAAGGCCTTTGACGATCTGACGGTGCTCGACGCCACGCGC
CGCACCGACGGCAAAACCTACACCATCGTCAACAAGTACGTCCCGGATGCCGGCAAGCCG
CCGGTCTTCCGCAAGATCCAGTGCAACCATTGCATGGAGCCGGCCTGCGCCTCGGCCTGC
TTCGTGGCGGCTTTCAAGAAGTCCGAAACCGGCGCGGTGGTCTACGACCCCGACGTCTGC
GTCGGCTGCCGCTACTGCATGGTGGCCTGCCCGTTCAACATCCCGGCTTACGAGTACGAC
AAGGCCTTCACTCCCCGGGTCATGAAATGCACCATGTGCCAGCCGCGCCTGCTCGAAGGC
AAGCTGCCCGGCTGCGTCGAGGCCTGCCCCAAGGAAGCCCTCGTCTTCGGCAAGCGCCGC
GAACTGCTCAACCTGGCCTGGGACCGCATCGGCGGCAATCCCGGACGCTACGTCGAGCAT
GTCTACGGCGAGCGCGAGATGGGCGGCACGAGCTGGCTGACCATCGCGCCCAAGCCGTCC
TTTGCCGCCATCGGCATGGATGAAAACCTCGGCACCACCTCCGCGCCGGAGCTGACCTCC
GGAGCCCTGGCCGCCGTGCCCGCCGTGGCCGGCATCTGGCCGGTGCTGCTGACCGGGCTT
TACGCCATCAGCAAGCGCAAGGAAAAGATCGCCGAGTCCGAGAAGCAGGCCGCCGTGGCC
GCGGCCATCGCCAAGGCCAGCGCCGACGCCGAGGCCAAGCTGGCCGAGGAACTGGCCAAG
GCCGAGGTCGCGGGCAAGCGGCGCATCGAGGTCGAGGTCAAAAAGGCCCTGGAAGCCGCC
GCCAAGGCCGGCGAAGAAGGGGAGGACGCGTAA


>DMR_12840 HMC operon ORF 2 protein
MKRRHFLGLLGAAGVTLGSGATAKAASLGDVKGLPNAGGVLFDASRCIGCRKCEAACNQV
NDLPKPAKAFDDLTVLDATRRTDGKTYTIVNKYVPDAGKPPVFRKIQCNHCMEPACASAC
FVAAFKKSETGAVVYDPDVCVGCRYCMVACPFNIPAYEYDKAFTPRVMKCTMCQPRLLEG
KLPGCVEACPKEALVFGKRRELLNLAWDRIGGNPGRYVEHVYGEREMGGTSWLTIAPKPS
FAAIGMDENLGTTSAPELTSGALAAVPAVAGIWPVLLTGLYAISKRKEKIAESEKQAAVA
AAIAKASADAEAKLAEELAKAEVAGKRRIEVEVKKALEAAAKAGEEGEDA

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.