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CDS Information : DMR_12850

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 1,392,708 / 1,393,880 / +
Location 1392708..1393880
Type CDS
Length 1,173 bp (390 aa)

close this sectionAnnotation

Product HMC operon ORF 3 protein
Gene name
Functional category Metabolism
- Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P33390 Pubmed:8335628

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-145A8ZUW6_DESOHPolysulphide reductase NrfDAlignment
2E=1e-144A1VG57_DESVVPolysulphide reductase, NrfDAlignment
3E=1e-144HMC3_DESVHProtein DVU_0534
HMC operon ORF 3
Alignment
4E=1e-144Q315E4_DESDGHmc operon protein 3Alignment
5E=1e-125Q9AJ66_DESDEPutative transmembrane heme b-type cytochromeAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR005614 Polysulphide reductase, NrfD (Family)
 [39-339]  0.0019 PF03916
PF03916   NrfD
SignalP No significant hit
TMHMM
 [13-35]  Transmembrane (i-o) [50-72]  Transmembrane (o-i) [85-107]  Transmembrane (i-o) [127-149]  Transmembrane (o-i) [170-192]  Transmembrane (i-o) [207-229]  Transmembrane (o-i) [250-272]  Transmembrane (i-o) [285-307]  Transmembrane (o-i) [320-342]  Transmembrane (i-o) [352-374]  Transmembrane (o-i)
Transmembrane 10   
SOSUI
 [16-38]  Transmembrane [49-65]  Transmembrane [85-107]  Transmembrane [127-149]  Transmembrane [161-183]  Transmembrane [204-226]  Transmembrane [251-273]  Transmembrane [286-307]  Transmembrane [317-339]  Transmembrane [356-378]  Transmembrane
Transmembrane 10   

close this sectionCalculated information (Amino acid sequence)

size of protein 390 amino acids
molecular mass 43,930.80 Da
pI 9.06
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.2
(36aa)
8.2
(32aa)
12.1
(47aa)
6.7
(26aa)
7.4
(29aa)
3.1
(12aa)
4.1
(16aa)
3.8
(15aa)
8.2
(32aa)
4.6
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.4
(25aa)
1
(4aa)
2.8
(11aa)
1.8
(7aa)
5.9
(23aa)
3.1
(12aa)
2.3
(9aa)
3.8
(15aa)
3.1
(12aa)
2.3
(9aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.