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CDS Information : DMR_12860

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 1,393,896 / 1,394,030 / +
Location 1393896..1394030
Type CDS
Length 135 bp (44 aa)

close this sectionAnnotation

Product HMC operon ORF 4 protein
Gene name
Functional category Metabolism
- Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P33391 Pubmed:8335628

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-10Q315E5_DESDGHmc operon protein 4Alignment
2E=2e-06A1VG58_DESVVHmc operon protein 4Alignment
3E=2e-06HMC4_DESVHProtein DVU_0533
HMC operon ORF 4
Alignment
HAMAP No significant hit
InterPro No significant hit
SignalP No significant hit
TMHMM
 [15-34]  Transmembrane (o-i)
Transmembrane 1   
SOSUI
 [10-32]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 44 amino acids
molecular mass 5,394.42 Da
pI 9.25
aa composition
AlaValLeuIlePheTrpProMetGlySer
0
(0aa)
9.1
(4aa)
13.6
(6aa)
4.5
(2aa)
9.1
(4aa)
2.3
(1aa)
0
(0aa)
6.8
(3aa)
4.5
(2aa)
2.3
(1aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(3aa)
2.3
(1aa)
4.5
(2aa)
2.3
(1aa)
4.5
(2aa)
6.8
(3aa)
4.5
(2aa)
6.8
(3aa)
4.5
(2aa)
4.5
(2aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.