CDS Information : DMR_12870

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Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	1,394,065 / 1,394,742 / +
Location	1394065..1394742
Type	CDS
Length	678 bp (225 aa)

Product	HMC operon ORF 5 protein
Gene name
Functional category	Metabolism - Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:P33392 Pubmed:8335628

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=2e-69 A8ZUW8_DESOH Hmc operon protein 5 Alignment 2 E=2e-65 A1VG59_DESVV Hmc operon protein 5 precursor Alignment 3 E=2e-65 HMC5_DESVH Protein DVU_0532 HMC operon ORF 5 Alignment 4 E=8e-61 Q315E6_DESDG Hmc operon protein 5 Alignment 5 E=1e-43 A8ZS95_DESOH Putative uncharacterized protein Alignment
HAMAP	No significant hit
InterPro	No significant hit
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 5
SOSUI	Transmembrane 6

size of protein	225 amino acids
molecular mass	24,839.61 Da
pI	9.8
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.7 (24aa) 6.7 (15aa) 12.9 (29aa) 10.2 (23aa) 7.1 (16aa) 4 (9aa) 3.6 (8aa) 2.7 (6aa) 9.8 (22aa) 5.3 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.9 (11aa) 1.8 (4aa) 0.9 (2aa) 2.2 (5aa) 2.2 (5aa) 2.7 (6aa) 3.1 (7aa) 4.9 (11aa) 3.1 (7aa) 1.3 (3aa)

>DMR_12870 HMC operon ORF 5 protein
ATGTATGCATTCCTGACGGGTCCGATGCTGTGGCTGTCGTTCGCCATATGCATCCTCGGC
TGCGCCTGGCGCGCCTATATGTACGTCAAGGGCCTCAGCTGGCAGCTCGACCGGGTGGCT
TACGGCCATAATACCGATCTGGCCGTCAAAGGGGCGCTCAAGTCCATCTTCCACTGGCTC
ATTCCCTTTGCCTCGTGCAGCTGGCGGGCCAAGCCGGTCTTTGCCACGGCCTTCTTCCTG
CTGCACATCGGCCTGGTCATCGTGCCGATCTTCCTCTACGCCCACGTTATGATCGTGGCC
GAGCGCTTCGGCGTGTCCTGGCCGACCATGCCTGACGGGCTGGCCGACATCCTGACCATC
CTGGCCATTCTGGCCGGCCTGTTCATCCTGTTGCGCCGCTTCGGCTTAAGCGAAGTGCGC
ATCATCACCACCCGCCAGGATCTGGGGATCATGGCGATCAGCCTCGCCCCCCTGGTCACC
GGCTTCGTGGCCGCCCACCAGAGCGGCGACGGCAACGGTTGGCTTCTGGCCCACATCATC
ACCGGCGAAATCTGGCTCATCGCCGTGCCGTTCACCAAGCTGTCCCACGCCGTGCTGTTC
TTCTGCTCCCGGGCCCAGATCGGGATCGACTTCGGCACCAAGCGCGGCGGTCAGCGCGGC
AGCGGCATCGTCTGGTAA


>DMR_12870 HMC operon ORF 5 protein
MYAFLTGPMLWLSFAICILGCAWRAYMYVKGLSWQLDRVAYGHNTDLAVKGALKSIFHWL
IPFASCSWRAKPVFATAFFLLHIGLVIVPIFLYAHVMIVAERFGVSWPTMPDGLADILTI
LAILAGLFILLRRFGLSEVRIITTRQDLGIMAISLAPLVTGFVAAHQSGDGNGWLLAHII
TGEIWLIAVPFTKLSHAVLFFCSRAQIGIDFGTKRGGQRGSGIVW

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.