small fontnormal fontlarge fontmail to

CDS Information : DMR_12880

close allopen/close all

close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 1,394,779 / 1,396,188 / +
Location 1394779..1396188
Type CDS
Length 1,410 bp (469 aa)

close this sectionAnnotation

Product HMC operon ORF 6 protein
Gene name
Functional category Metabolism
- Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P33393 Pubmed:8335628

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0A1VG60_DESVVPutative uncharacterized proteinAlignment
2E=0HMC6_DESVHProtein DVU_0531
HMC operon ORF 6
Alignment
3E=0Q315E7_DESDGHmc operon protein 6Alignment
4E=0A8ZUW9_DESOHPutative uncharacterized proteinAlignment
5E=9e-80A8ZS94_DESOHPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain)
 [121-132]  PS00198
PS00198   4FE4S_FER_1
IPR004017 Cysteine-rich region, CCG (Domain)
 [363-429]  1.8e-06 PF02754
PF02754   CCG
IPR009051 Alpha-helical ferredoxin (Domain)
 [60-160]  8.3e-12 SSF46548
SSF46548   alpha-helical ferredoxin
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain)
 [112-140]  7.046 PS51379
PS51379   4FE4S_FER_2
IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (Conserved_site)
 [121-132]  PS00198
PS00198   4FE4S_FER_1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 469 amino acids
molecular mass 53,651.31 Da
pI 5.12
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.5
(35aa)
5.3
(25aa)
7.7
(36aa)
5.8
(27aa)
1.9
(9aa)
3.2
(15aa)
5.5
(26aa)
3.2
(15aa)
7
(33aa)
3
(14aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.1
(24aa)
4.5
(21aa)
3
(14aa)
3.4
(16aa)
4.3
(20aa)
6.2
(29aa)
2.8
(13aa)
5.3
(25aa)
5.8
(27aa)
9.6
(45aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-054 DM1GRC2E00013F07 1,394,395 1,431,063 36,669

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.