CDS Information : DMR_17570

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Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	1,956,590 / 1,954,215 / -
Location	complement(1954215..1956590)
Type	CDS
Length	2,376 bp (791 aa)

Product	Penicillin-binding protein 1C Synonym: PBP-1c
Gene name	pbpC
Functional category	Unclassified - uncharacterized protein
EC number	2.4.2.-
Note	Belongs to the Penicillin-binding protein 1C family(IPR011815). Contains one Glycosyl transferase, family 51 domain(IPR001264). Contains one Penicillin-binding protein, transpeptidase domain(IPR001460).
KEGG pathway
Sequence feature
References	Uniprot:P76577 Pubmed:10542235

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-143 Q2AH10_9FIRM Penicillin-binding protein 1C Alignment 2 E=1e-142 Q090H2_STIAU Penicillin-binding protein 1C Alignment 3 E=1e-141 Q1D9N4_MYXXD Penicillin-binding protein 1C Alignment 4 E=1e-128 Q3A744_PELCD Membrane carboxypeptidase/penicillin-binding protein PbpC Alignment 5 E=1e-123 A1ZNU6_9SPHI Penicillin-binding protein 1C Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001264 Glycosyl transferase, family 51 (Domain) PF00912   Transgly PD001895   Q92VA7_RHIME_Q92VA7; IPR001460 Penicillin-binding protein, transpeptidase (Domain) PF00905   Transpeptidase IPR009647 Penicillin-binding, C-terminal (Domain) PF06832   BiPBP_C IPR011815 Penicillin-binding protein 1C (Family) TIGR02073   PBP_1c: penicillin-binding protein 1C IPR012338 Beta-lactamase-type transpeptidase fold (Domain) G3DSA:3.40.710.10   no description SSF56601   beta-lactamase/transpeptidase-like
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	791 amino acids
molecular mass	83,904.54 Da
pI	10.32
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.3 (129aa) 6.1 (48aa) 11 (87aa) 3.4 (27aa) 3 (24aa) 1.6 (13aa) 9.5 (75aa) 1.3 (10aa) 8.3 (66aa) 4.8 (38aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.2 (57aa) 0.9 (7aa) 1.5 (12aa) 2.1 (17aa) 1.9 (15aa) 2.1 (17aa) 1.3 (10aa) 9.1 (72aa) 4.4 (35aa) 4 (32aa)

>DMR_17570 Penicillin-binding protein 1C
ATGACCGCAACGGCTTCACGCCCGCCCCGCTGGCGGCGACGGGCGGCCGTGGCCGCGGCC
GTGCTGCTCCTTGCCGCCCTGGCTGGCGGGCTGGCCCTTTTTGCGGCCACGGCCCGGCCG
CCCTTTCCCCTGGCCGCGCTGTCGCCGCCGCCGGCCACGGTCGTTGCCGCTCGTAACGGC
CAGCCCCTGCGCCTCTATCTCGCCCCGGACGAATCCTGGCGCTTTCCGGTGCGCCTGTCC
GGCGTCGCCCCCATCCTGCCGAAACTCATCCTCGCCGCCGAGGACAAGCGGTTCTACCGC
CACCCCGGCGTCGATCCCCTGGCCCTGGGCCGCGCCGCGCTGTCTAATCTCGCGGCCGGC
CACGTCGTTTCCGGCGGCTCCACCATCACCATGCAGCTGGCCCGGCTGGCCCAGCCCAAG
GAGCGCACCCTGGCCGCCAAATGGCGCGAGGCTCTGGCCGCCCTGGCCCTGGAACGCAAG
CTCGGCAAGGACGCCATCCTGGAGCGCTACCTCAACATGGCCCCCTACGGCGGCAACATC
GTGGGCGTGGGCGCGGCCGCCACCCTCTATTTCGGCAAGACGCCGGACAAGCTGTCCCTG
GCCGAGGCCGCGCTCTTGACCGTCCTGCCCCGCTCGCCCCTGCGCCTTGATCCCCTGCGC
CGCCCCGAAGCGGCCAAGGCCGCCCGCGACAAGCTTCTCGCCGCCATGGCCCGGCGCGGC
GTCATCACCTCCGAAGCGGCCAGGGAAGCCGCCGCCGCCCCGGTGCCCACGCGCCTGGCC
CAACTCCCGTTCGCCGCGCCCCATTTCGCCCAAATGGCCCGCGAGGCCGCCGGCCCCAGC
CCGCGCATCGACACCACCCTGGACCCGGCCGCCCAAAAGACCGCCACCGACGTGCTGCGG
TCCCGATCCCGCTGGCTGGCCGCCCAGGGCCTTGGCAGCGTGGCCGCCGTGGTCATCGAA
CCGGCCAGCCGCGAGGTTAGGGTCATGGTCGGCGGCGTGGACTGGTTCGGCGACGCCCGG
TTCGGGCAGATAAACGGCGCGACCATCCGCCGCTCGCCCGGCTCGACCTTAAAGCCCTTC
CTCTACGCCATGGCCATGGACCAGGGCCGCGTCTTTCCCCAAAGCCAGATGCTCGACATC
CCCACCGGCTTTGGCGGCTATACGCCCAAAAACTATGATGGCCTGTTCCGGGGCCGGGTG
ACGACCGAGCAGGCGCTCATCACTTCGCTGAACATCCCGGCCGTGCGGCTTTTAAACGAC
GTCGGCCCGGCCCCCTTCCTCGACCTCCTGCGCCGGGGGGGCCTGACGACCTTGGACAAG
CCGGCCAGCCACTACGGGCTTTCGCTCATCCTTGGCGGCGGCGAGGCCACGCTGACCTCC
CTGACCAACCTCTACGCCTGCCTGGCCGACGACGGCCGGTTCCGGCCGCCCGTCTTTCTG
GCCAATGCCCCGGCCGCGAGGGCCGAGCGGCTTTTTTCCCCCGAGGCCTGCGCGCTGACC
ACCGAAATATTGACCCGGGTCGAACGGCCCGATCTGCCCACTTCCTGGGAGCGCGCCCTG
GCCGTGCCCCAGGTGGCCTGGAAGACCGGCACCTCGTTTGGCCACCGCGACGCCTGGGCC
GTGGGCATAAGCGCCGGCTACGCCATTGGCGTGTGGGTGGGCAACATGGACGGCCGAGCC
GTGGCCGGCATCTCGGGCGCGGTCCATGCCGGGCCGATCCTTTTCGAGCTGTTCCGGGCG
CTGGAACCCTATGGTTCGCGGCCGGCGGCCAGGACCGGACTCAATCTGGCCACCATCGAG
GTCTGCGCCGACAGCCGCGAGCTGCCCGGCCCCGACTGCCCCCGGCGCGTGCCGGCCACC
ATCATCCCCGGCCGCAGCCGCCTGACCCCTTGCCCGATCCACCGCCGCACCCTGGTGGAC
ACTAAGACCGGCGAGCGCCTCACCGCCGACTGCGCCGCCGGCCACGAGGCCACCACCGCC
GCCGTCACGGAGTATCCGGGCGAACTCGTGTCCTGGTGGCGGTCGACGGGCATCCCCTTC
GAGTCGCCCCCGCCCCTGGCCCCGGACTGCCTGGGCACGGCCGGAGCCGGTCCGCGCATC
GTCTCGCCAAGCCCGGCCACGGTCTATGCCGTGCGCCCCGACATTCCGGCCGACTTCCAG
CAGATCACCCTGTCCGCCGACGCCCCGGCCGCCACCACCCGCTTGTCCTGGTACGTGGAC
GGCGAACTGGCCGCCCAGGGACCGCCCGGCGGCCGGCTGTTCTGGCGGCCCACTCCCGGC
GCGCACCGCTTCGCCGTCACCGACGACCAGGGCCGCAGCCACGCCGTCACCGTGCGCGTC
GAAACGCCAACCCCAACCAAGGAGGACGCCCCATGA


>DMR_17570 Penicillin-binding protein 1C
MTATASRPPRWRRRAAVAAAVLLLAALAGGLALFAATARPPFPLAALSPPPATVVAARNG
QPLRLYLAPDESWRFPVRLSGVAPILPKLILAAEDKRFYRHPGVDPLALGRAALSNLAAG
HVVSGGSTITMQLARLAQPKERTLAAKWREALAALALERKLGKDAILERYLNMAPYGGNI
VGVGAAATLYFGKTPDKLSLAEAALLTVLPRSPLRLDPLRRPEAAKAARDKLLAAMARRG
VITSEAAREAAAAPVPTRLAQLPFAAPHFAQMAREAAGPSPRIDTTLDPAAQKTATDVLR
SRSRWLAAQGLGSVAAVVIEPASREVRVMVGGVDWFGDARFGQINGATIRRSPGSTLKPF
LYAMAMDQGRVFPQSQMLDIPTGFGGYTPKNYDGLFRGRVTTEQALITSLNIPAVRLLND
VGPAPFLDLLRRGGLTTLDKPASHYGLSLILGGGEATLTSLTNLYACLADDGRFRPPVFL
ANAPAARAERLFSPEACALTTEILTRVERPDLPTSWERALAVPQVAWKTGTSFGHRDAWA
VGISAGYAIGVWVGNMDGRAVAGISGAVHAGPILFELFRALEPYGSRPAARTGLNLATIE
VCADSRELPGPDCPRRVPATIIPGRSRLTPCPIHRRTLVDTKTGERLTADCAAGHEATTA
AVTEYPGELVSWWRSTGIPFESPPPLAPDCLGTAGAGPRIVSPSPATVYAVRPDIPADFQ
QITLSADAPAATTRLSWYVDGELAAQGPPGGRLFWRPTPGAHRFAVTDDQGRSHAVTVRV
ETPTPTKEDAP

NBRC No.	clone name	start	stop	length(bp)
G11-001-076	DM1GRC2E00016B02	1,938,226	1,977,661	39,436

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.