small fontnormal fontlarge fontmail to

CDS Information : DMR_22640

close allopen/close all

close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 2,541,016 / 2,542,341 / +
Location 2541016..2542341
Type CDS
Length 1,326 bp (441 aa)

close this sectionAnnotation

Product 4-aminobutyrate aminotransferase
Synonym: (S)-3-amino-2-methylpropionate transaminase(EC 2.6.1.19)
Synonym: Gamma-amino-N-butyrate transaminase(EC 2.6.1.22)
Synonym: GABA transaminase(EC 2.6.1.22)
Synonym: Glutamate:succinic semialdehyde transaminase(EC 2.6.1.22)
Synonym: GABA aminotransferase(EC 2.6.1.22)
Synonym: GABA-AT(EC 2.6.1.22)
Synonym: L-AIBAT(EC 2.6.1.22)
Gene name gabT
Functional category Metabolism
- Amino Acid Metabolism
EC number 2.6.1.19
2.6.1.22
Note
KEGG pathway map:00640 KO:K00823
map:00251 KO:K00823
map:00410 KO:K00823
map:00650 KO:K00823
map:00252 KO:K00823
map:00280 KO:K00823
Sequence feature
References Family/Domain:IPR004632
Uniprot:P22256 Pubmed:2254272

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-152A5GDL1_GEOUR4-aminobutyrate aminotransferaseAlignment
2E=1e-144A6TL54_ALKMQ4-aminobutyrate aminotransferaseAlignment
3E=1e-136A5D325_PELTS4-aminobutyrate aminotransferase and related aminotransferasesAlignment
4E=1e-134A5N1Y1_CLOK5GabTAlignment
5E=1e-132B0Q4U8_BACAN4-aminobutyrate aminotransferaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR004632 Bacterial 4-aminobutyrate aminotransferase (Family)
 [14-434]  2.8e-202 TIGR00700
TIGR00700   GABAtrnsam: 4-aminobutyrate transaminase
IPR005814 Aminotransferase class-III (Family)
 [27-438]  1.9e-198 PTHR11986
PTHR11986   AMINOTRANSFERASE CLASS III
 [247-284]  PS00600
PS00600   AA_TRANSFER_CLASS_3
 [29-372]  2.3e-146 PF00202
PF00202   Aminotran_3
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain)
 [62-330]  6.3e-90 G3DSA:3.40.640.10
G3DSA:3.40.640.10   no description
IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain)
 [3-435]  2.4e-140 SSF53383
SSF53383   PLP-dependent transferases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 441 amino acids
molecular mass 47,550.18 Da
pI 8.31
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.8
(52aa)
8.4
(37aa)
8.2
(36aa)
4.3
(19aa)
5.4
(24aa)
0
(0aa)
5
(22aa)
3.2
(14aa)
10.7
(47aa)
3.4
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.6
(16aa)
3.2
(14aa)
3.2
(14aa)
2.7
(12aa)
3.2
(14aa)
6.3
(28aa)
1.6
(7aa)
5.4
(24aa)
4.3
(19aa)
6.1
(27aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-101 DM1GRC2E00019F09 2,507,616 2,548,490 40,875
G11-001-102 DM1GRC2E00019C12 2,539,498 2,574,071 34,574

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.