CDS Information : DMR_22640

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	2,541,016 / 2,542,341 / +
Location	2541016..2542341
Type	CDS
Length	1,326 bp (441 aa)

Product	4-aminobutyrate aminotransferase Synonym: (S)-3-amino-2-methylpropionate transaminase(EC 2.6.1.19) Synonym: Gamma-amino-N-butyrate transaminase(EC 2.6.1.22) Synonym: GABA transaminase(EC 2.6.1.22) Synonym: Glutamate:succinic semialdehyde transaminase(EC 2.6.1.22) Synonym: GABA aminotransferase(EC 2.6.1.22) Synonym: GABA-AT(EC 2.6.1.22) Synonym: L-AIBAT(EC 2.6.1.22)
Gene name	gabT
Functional category	Metabolism - Amino Acid Metabolism
EC number	2.6.1.19 2.6.1.22
Note
KEGG pathway	map:00640 KO:K00823 map:00251 KO:K00823 map:00410 KO:K00823 map:00650 KO:K00823 map:00252 KO:K00823 map:00280 KO:K00823
Sequence feature
References	Family/Domain:IPR004632 Uniprot:P22256 Pubmed:2254272

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-152 A5GDL1_GEOUR 4-aminobutyrate aminotransferase Alignment 2 E=1e-144 A6TL54_ALKMQ 4-aminobutyrate aminotransferase Alignment 3 E=1e-136 A5D325_PELTS 4-aminobutyrate aminotransferase and related aminotransferases Alignment 4 E=1e-134 A5N1Y1_CLOK5 GabT Alignment 5 E=1e-132 B0Q4U8_BACAN 4-aminobutyrate aminotransferase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR004632 Bacterial 4-aminobutyrate aminotransferase (Family) TIGR00700   GABAtrnsam: 4-aminobutyrate transaminase IPR005814 Aminotransferase class-III (Family) PTHR11986   AMINOTRANSFERASE CLASS III PS00600   AA_TRANSFER_CLASS_3 PF00202   Aminotran_3 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain) G3DSA:3.40.640.10   no description IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain) SSF53383   PLP-dependent transferases
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	441 amino acids
molecular mass	47,550.18 Da
pI	8.31
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11.8 (52aa) 8.4 (37aa) 8.2 (36aa) 4.3 (19aa) 5.4 (24aa) 0 (0aa) 5 (22aa) 3.2 (14aa) 10.7 (47aa) 3.4 (15aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.6 (16aa) 3.2 (14aa) 3.2 (14aa) 2.7 (12aa) 3.2 (14aa) 6.3 (28aa) 1.6 (7aa) 5.4 (24aa) 4.3 (19aa) 6.1 (27aa)

>DMR_22640 4-aminobutyrate aminotransferase
GTGAACACCACCGACAAGGCGCAGGAACTGCAAGCATTGCGTGATCGCTATGTCCCCAAG
GGGCATCCCAACGCCACGCCCTTTTTCGTCGAATCCGCCAAGGGCGCCCTGCTTCGCGAC
GTCACCGGACGCGAGTTCATCGATTTCGTCGGCGGCATCGGCGTGTTAAACGTCGGCCAC
TGCCACCCCAAGGTCGTCGCCGCCGTCAAGGATCAGGCCGGACGCTATCTCCACACCTGC
TCCATGGTCACCATGTACGAGCCCTACGTCCAGCTCGCCGCCCGCCTGTCCGAGGCCGCC
CCGGGCGACTTCGAGAAAAAGGCGATGTTCGTCAACAGCGGCTCCGAAGCCGTGGAAAAC
GCCGTGAAGATCGCTCGTTGCCACACCGGCCGGGCCGGCGTCGTGTCCATGAAAAACGCC
TTCCACGGCCGCACCCTGCTGGCCATGTCCCTAACCAGCAAGGTCAAGCCCTACAAATTC
GGCTTCGGCCCCCTGGCCCCGGAAGTCTACCAGTACCCCAACTACGCCTACTGCTACCGT
TGCCCCCTGGGCCTGACCTATCCCAAGTGCGGCGTGGCCTGCGCCGACAAGCTGCGCGAA
TTCTTCATCGCCACCGCCGCCGCCGAGAACATCGCCTGCATCATCGCCGAGCCGGTCCAG
GGCGAAGGCGGCTTCGTGGTTCCGCCCAAGGAATTCTTCGAGAAGCTGCGCGCCATCTGC
GACGAATACGGCATCGTCTTTATCGCCGACGAAATCCAGTCCGGCTTTGGCCGCACCTCC
AAGCTCTTTGCCATGGAGCACTTCGGCGTGGCCCCGGACCTCATGACCGTGGCCAAATCC
ATGGGCGGCGGCCTGCCCCTGGCCGGCGTGGTCGGCAAGGCCGAGATCATGGATGCCGTG
GCCCCGGGCGGCATCGGCGGCACCTACGGCGGCAACCCGCTGGCCTGCCGCGCCGGCCTG
GCCGTCATGGACATCTTCGAACAAGACAACCTGCTGGCCAAGGCCGAGCGCCTGGGCAAC
GTGGTCAAGCGCCGGTTTGCCGCGTTTAAAAAACAGTACCAGCTCATCGGCGACGAGCGC
GGCCTTGGAGCCATGCGCGCCCTGGAATTCGTCTCCGACCGCGCCACCAAGGCCCCCTGC
CCCGAGGCGGCCAAGGGCGTGGCCAAGTTCTGCCAGGACAACGGCCTGCTCGTGTTGTCC
TGCGGCAACTTCGGCAACTGCATCCGGGTGCTCATGCCGCTGGTCATCACCCGTGACCAG
CTCGACCGCGGCCTGGACATTATGGAAGAAGGCATCCGCGAGGTCTCCAAAAGCCTCGGC
AAATAA


>DMR_22640 4-aminobutyrate aminotransferase
MNTTDKAQELQALRDRYVPKGHPNATPFFVESAKGALLRDVTGREFIDFVGGIGVLNVGH
CHPKVVAAVKDQAGRYLHTCSMVTMYEPYVQLAARLSEAAPGDFEKKAMFVNSGSEAVEN
AVKIARCHTGRAGVVSMKNAFHGRTLLAMSLTSKVKPYKFGFGPLAPEVYQYPNYAYCYR
CPLGLTYPKCGVACADKLREFFIATAAAENIACIIAEPVQGEGGFVVPPKEFFEKLRAIC
DEYGIVFIADEIQSGFGRTSKLFAMEHFGVAPDLMTVAKSMGGGLPLAGVVGKAEIMDAV
APGGIGGTYGGNPLACRAGLAVMDIFEQDNLLAKAERLGNVVKRRFAAFKKQYQLIGDER
GLGAMRALEFVSDRATKAPCPEAAKGVAKFCQDNGLLVLSCGNFGNCIRVLMPLVITRDQ
LDRGLDIMEEGIREVSKSLGK

NBRC No.	clone name	start	stop	length(bp)
G11-001-101	DM1GRC2E00019F09	2,507,616	2,548,490	40,875
G11-001-102	DM1GRC2E00019C12	2,539,498	2,574,071	34,574

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.