small fontnormal fontlarge fontmail to

CDS Information : DMR_28220

close allopen/close all

close this sectionGenomic map

Display

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 3,181,320 / 3,180,169 / -
Location complement(3180169..3181320)
Type CDS
Length 1,152 bp (383 aa)

close this sectionAnnotation

Product isocitrate dehydrogenase[NADP]
Synonym: Oxalosuccinate decarboxylase
Synonym: IDH
Synonym: NADP(+)-specific ICDH
Synonym: IDP
Gene name icd
Functional category Metabolism
- Carbohydrate Metabolism
EC number 1.1.1.42
Note The product of DMR_28220 may form a homodimer.
KEGG pathway map:00020 KO:K00031
map:00720 KO:K00031
map:00480 KO:K00031
Sequence feature
References Family/Domain:IPR001804
Uniprot:P39126 Pubmed:11290745,11751849

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-159A1VGB4_DESVVIsocitrate dehydrogenase [NADP]Alignment
2E=1e-159Q72EU1_DESVHIsocitrate dehydrogenase [NADP]Alignment
3E=1e-152Q30VM7_DESDGIsocitrate dehydrogenase [NADP]Alignment
4E=1e-129B0TCL8_HELMIIsocitrate dehydrogenase [NADP]Alignment
5E=1e-129A0LQ63_SYNFMIsocitrate dehydrogenase [NADP]Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001804 Isocitrate/isopropylmalate dehydrogenase (Family)
 [4-379]  2.2e-132 PF00180
PF00180   Iso_dh
 [270-289]  PS00470
PS00470   IDH_IMDH
 [4-383]  2.9e-129 G3DSA:3.40.718.10
G3DSA:3.40.718.10   no description
 [27-370]  2.5e-138 PTHR11835
PTHR11835   DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
IPR004439 Isocitrate dehydrogenase NADP-dependent, prokaryotic (Family)
 [27-370]  2.5e-138 PTHR11835:SF1
PTHR11835:SF1   ISOCITRATE DEHYDROGNENASE
IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site (Conserved_site)
 [270-289]  PS00470
PS00470   IDH_IMDH
IPR024084 Isopropylmalate dehydrogenase-like domain (Domain)
 [4-383]  2.9e-129 G3DSA:3.40.718.10
G3DSA:3.40.718.10   no description
 [4-379]  2.2e-132 PF00180
PF00180   Iso_dh
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 383 amino acids
molecular mass 41,109.34 Da
pI 6.41
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.8
(49aa)
7
(27aa)
8.9
(34aa)
6.3
(24aa)
3.7
(14aa)
1
(4aa)
5
(19aa)
2.3
(9aa)
10.2
(39aa)
2.9
(11aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6
(23aa)
0.8
(3aa)
2.3
(9aa)
2.9
(11aa)
2.6
(10aa)
7.3
(28aa)
1.8
(7aa)
3.9
(15aa)
5.7
(22aa)
6.5
(25aa)

open this sectionSequence