small fontnormal fontlarge fontmail to

CDS Information : DMR_29160

close allopen/close all

close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 3,288,818 / 3,288,360 / -
Location complement(3288360..3288818)
Type CDS
Length 459 bp (152 aa)

close this sectionAnnotation

Product cytochrome c family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011031

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-39Q72DK7_DESVHCytochrome c family proteinAlignment
2E=1e-39A1VF62_DESVVCytochrome c family proteinAlignment
3E=8e-39Q30XE3_DESDGCytochrome c family protein precursorAlignment
4E=3e-33A1VFR2_DESVVCytochrome c family protein precursorAlignment
5E=3e-33Q72E77_DESVHCytochrome c family proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011031 Multihaem cytochrome (Domain)
 [28-138]  8.781 PS51008
PS51008   MULTIHEME_CYTC
SignalP
 [1-22]  1 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 152 amino acids
molecular mass 16,288.63 Da
pI 8
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.6
(13aa)
6.6
(10aa)
8.6
(13aa)
4.6
(7aa)
4.6
(7aa)
0
(0aa)
4.6
(7aa)
0.7
(1aa)
9.9
(15aa)
10.5
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.3
(5aa)
5.3
(8aa)
3.9
(6aa)
1.3
(2aa)
3.9
(6aa)
7.9
(12aa)
3.9
(6aa)
2.6
(4aa)
2
(3aa)
7.2
(11aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-130 DM1GRC2E00043A01 3,264,155 3,301,720 37,566
G11-001-131 DM1GRC2E00020B03 3,287,020 3,323,105 36,086

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.