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CDS Information : DMR_29360

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 3,317,206 / 3,315,218 / -
Location complement(3315218..3317206)
Type CDS
Length 1,989 bp (662 aa)

close this sectionAnnotation

Product aldehyde ferredoxin oxidoreductase family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR001203

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-69Q3ABF2_CARHZAldehyde ferredoxin oxidoreductase, tungsten-containingAlignment
2E=8e-67B0TA33_HELMITungsten-containing aldehyde ferredoxin oxidoreductaseAlignment
3E=1e-66Q2RKJ9_MOOTAAldehyde ferredoxin oxidoreductaseAlignment
4E=5e-66A5D527_PELTSAldehyde:ferredoxin oxidoreductaseAlignment
5E=3e-65B2A731_NATTJAldehyde ferredoxin oxidoreductaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal (Domain)
 [215-634]  3.5e-50 SSF48310
SSF48310   Aldehyde ferredoxin oxidoreductase, C-terminal domains
 [221-630]  4e-12 PF01314
PF01314   AFOR_C
IPR001203 Aldehyde ferredoxin oxidoreductase (Family)
 [221-630]  4e-12 PF01314
PF01314   AFOR_C
 [5-211]  3.9e-79 PF02730
PF02730   AFOR_N
IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal (Domain)
 [5-211]  3.9e-79 PF02730
PF02730   AFOR_N
 [2-215]  2e-58 G3DSA:3.60.9.10
G3DSA:3.60.9.10   no description
 [5-211]  1.3e-79 SM00790
SM00790   no description
 [2-216]  7.4e-66 SSF56228
SSF56228   Aldehyde ferredoxin oxidoreductase, N-terminal domain
IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 (Domain)
 [224-410]  8.6e-19 G3DSA:1.10.569.10
G3DSA:1.10.569.10   no description
IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 (Domain)
 [472-644]  3.5e-22 G3DSA:1.10.599.10
G3DSA:1.10.599.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 662 amino acids
molecular mass 73,161.98 Da
pI 5.47
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(53aa)
5.3
(35aa)
8.2
(54aa)
6.5
(43aa)
2.9
(19aa)
2.6
(17aa)
3.9
(26aa)
2.4
(16aa)
11.6
(77aa)
4.8
(32aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.8
(32aa)
2
(13aa)
3.5
(23aa)
2.6
(17aa)
3.8
(25aa)
5.9
(39aa)
2
(13aa)
5.6
(37aa)
6.5
(43aa)
7.3
(48aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-131 DM1GRC2E00020B03 3,287,020 3,323,105 36,086
G11-001-132 DM1GRC2E00008B02 3,312,042 3,352,586 40,545

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.