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CDS Information : DMR_31240

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 3,538,908 / 3,537,715 / -
Location complement(3537715..3538908)
Type CDS
Length 1,194 bp (397 aa)

close this sectionAnnotation

Product elongation factor Tu
Synonym: EF-Tu
Gene name tuf
Functional category Genetic Information Processing
- Translation
EC number
Note
KEGG pathway KO:K02358
Sequence feature
References HAMAP:MF_00118_B

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0EFTU_DESVHElongation factor Tu
EF-Tu
Alignment
2E=0EFTU_DESVVElongation factor Tu
EF-Tu
Alignment
3E=0EFTU_LAWIPElongation factor Tu
EF-Tu
Alignment
4E=0EFTU_DESDGElongation factor Tu
EF-Tu
Alignment
5E=0EFTU_SYNFMElongation factor Tu
EF-Tu
Alignment
HAMAP
Database:HAMAP:20080521
 [1-397]  61.562 MF_00118_B
MF_00118_B   EFTU
InterPro
Database:interpro:18.0
IPR000795 Protein synthesis factor, GTP-binding (Domain)
 [10-207]  2e-99 PF00009
PF00009   GTP_EFTU
 [51-66]  PS00301
PS00301   EFACTOR_GTP
IPR004160 Translation elongation factor EFTu/EF1A, C-terminal (Domain)
 [302-396]  1.1e-61 PF03143
PF03143   GTP_EFTU_D3
IPR004161 Translation elongation factor EFTu/EF1A, domain 2 (Domain)
 [228-297]  2.3e-24 PF03144
PF03144   GTP_EFTU_D2
IPR004541 Translation elongation factor Tu (Family)
 [3-331]  2.9e-230 PTHR23115:SF31
PTHR23115:SF31   ELONGATION FACTOR TU (EF-TU)
 [1-397]  9.7e-267 TIGR00485
TIGR00485   EF-Tu: translation elongation factor Tu
IPR005225 Small GTP-binding protein domain (Domain)
 [10-187]  8.1e-11 TIGR00231
TIGR00231   small_GTP: small GTP-binding protein domain
IPR009000 Translation elongation and initiation factors/Ribosomal, beta-barrel (Domain)
 [206-305]  5e-36 SSF50447
SSF50447   Translation proteins
IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (Domain)
 [305-397]  1.2e-38 SSF50465
SSF50465   EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 397 amino acids
molecular mass 43,323.69 Da
pI 5.34
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.6
(30aa)
9.8
(39aa)
6.8
(27aa)
7.8
(31aa)
4
(16aa)
0
(0aa)
5.5
(22aa)
2.5
(10aa)
10.1
(40aa)
2.3
(9aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(27aa)
0.8
(3aa)
2.8
(11aa)
2.5
(10aa)
2
(8aa)
6
(24aa)
2.5
(10aa)
5.5
(22aa)
6.8
(27aa)
7.8
(31aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-137 DM1GRC2E00030G12 3,508,815 3,546,865 38,051
G11-001-138 DM1GRC2E00031H04 3,528,287 3,565,527 37,241

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.