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CDS Information : DMR_33620

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 3,779,468 / 3,777,798 / -
Location complement(3777798..3779468)
Type CDS
Length 1,671 bp (556 aa)

close this sectionAnnotation

Product cytochrome c family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011031

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0A0LEE1_SYNFMCytochrome c family protein precursorAlignment
2E=0Q726G4_DESVHCytochrome c family proteinAlignment
3E=0A1VA00_DESVVCytochrome c family protein precursorAlignment
4E=0A8ZZ35_DESOHCytochrome c family proteinAlignment
5E=1e-175A9JC35_9DELTPutative uncharacterized protein precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011031 Multihaem cytochrome (Domain)
 [78-325]  11.833 PS51008 [492-506]  6.53 PS51008
PS51008   MULTIHEME_CYTC
SignalP
 [1-31]  0.746 Signal
Bacteria, Gram-negative   
TMHMM
 [7-29]  Transmembrane (i-o) [522-544]  Transmembrane (o-i)
Transmembrane 2   
SOSUI
 [9-30]  Transmembrane [521-543]  Transmembrane
Transmembrane 2   

close this sectionCalculated information (Amino acid sequence)

size of protein 556 amino acids
molecular mass 60,721.21 Da
pI 8.37
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.1
(56aa)
6.5
(36aa)
5.6
(31aa)
2.7
(15aa)
3.6
(20aa)
2.2
(12aa)
6.8
(38aa)
2.9
(16aa)
9.4
(52aa)
5.6
(31aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.4
(30aa)
4
(22aa)
2.9
(16aa)
2.5
(14aa)
3.2
(18aa)
8.3
(46aa)
4.1
(23aa)
4
(22aa)
6.7
(37aa)
3.8
(21aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-148 DM1GRC2E00007E03 3,755,124 3,791,768 36,645
G11-001-149 DM1GRC2E00031C10 3,776,835 3,818,800 41,966

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.