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CDS Information : DMR_35740

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,047,239 / 4,044,606 / -
Location complement(4044606..4047239)
Type CDS
Length 2,634 bp (877 aa)

close this sectionAnnotation

Product cytochrome c family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR009056
Family/Domain:IPR011031

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q316Q4_DESDGCytochrome bd-type quinol oxidase subunit 1-likeAlignment
2E=1e-129A1VA32_DESVVCytochrome c, class I precursorAlignment
3E=1e-128Q726K0_DESVHCytochrome c family proteinAlignment
4E=1e-127Q315N4_DESDGCytochrome c family protein precursorAlignment
5E=1e-113Q728W8_DESVHCytochrome c family proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR009056 Cytochrome c, monohaem (Domain)
 [351-424]  7.293 PS51007 [580-682]  7.411 PS51007
PS51007   CYTC
IPR011031 Multihaem cytochrome (Domain)
 [359-373]  6.364 PS51008 [598-867]  10.156 PS51008
PS51008   MULTIHEME_CYTC
IPR012282 Cytochrome c region (Domain)
 [354-422]  2.5e-10 SSF46626
SSF46626   Cytochrome c
SignalP No significant hit
TMHMM
 [15-40]  Transmembrane (o-i) [61-83]  Transmembrane (i-o) [98-120]  Transmembrane (o-i) [133-155]  Transmembrane (i-o) [181-203]  Transmembrane (o-i) [216-238]  Transmembrane (i-o) [253-275]  Transmembrane (o-i) [282-304]  Transmembrane (i-o)
Transmembrane 8   
SOSUI
 [16-38]  Transmembrane [69-91]  Transmembrane [104-125]  Transmembrane [135-157]  Transmembrane [181-203]  Transmembrane [214-236]  Transmembrane [271-293]  Transmembrane
Transmembrane 7   

close this sectionCalculated information (Amino acid sequence)

size of protein 877 amino acids
molecular mass 93,437.88 Da
pI 7.33
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.7
(138aa)
7.5
(66aa)
10.8
(95aa)
2.9
(25aa)
4.6
(40aa)
2.4
(21aa)
6.6
(58aa)
2.4
(21aa)
9.4
(82aa)
4.3
(38aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.6
(49aa)
2.1
(18aa)
2.2
(19aa)
1.4
(12aa)
2.5
(22aa)
3.1
(27aa)
2.9
(25aa)
5.2
(46aa)
4.4
(39aa)
4.1
(36aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-158 DM1GRC2E00015B03 4,006,397 4,047,339 40,943
G11-001-159 DM1GRC2E00006D05 4,036,085 4,074,450 38,366

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.