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CDS Information : DMR_35840

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,057,632 / 4,058,123 / +
Location 4057632..4058123
Type CDS
Length 492 bp (163 aa)

close this sectionAnnotation

Product cytochrome c family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR011031

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-44Q72DK7_DESVHCytochrome c family proteinAlignment
2E=2e-44A1VF62_DESVVCytochrome c family proteinAlignment
3E=3e-37Q30XE3_DESDGCytochrome c family protein precursorAlignment
4E=1e-35A1VFR2_DESVVCytochrome c family protein precursorAlignment
5E=1e-35Q72E77_DESVHCytochrome c family proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011031 Multihaem cytochrome (Domain)
 [39-149]  8.555 PS51008
PS51008   MULTIHEME_CYTC
IPR012282 Cytochrome c region (Domain)
 [1-48]  0.0053 SSF46626
SSF46626   Cytochrome c
IPR023155 Cytochrome c-552/4 (Domain)
 [34-144]  5.2e-25 G3DSA:1.10.710.10
G3DSA:1.10.710.10   no description
SignalP
 [1-32]  0.673 Signal
Bacteria, Gram-negative   
TMHMM
 [7-29]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [9-31]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 163 amino acids
molecular mass 17,345.87 Da
pI 8.1
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.7
(24aa)
4.3
(7aa)
6.7
(11aa)
1.8
(3aa)
4.3
(7aa)
1.2
(2aa)
6.1
(10aa)
3.1
(5aa)
9.2
(15aa)
8
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.9
(8aa)
6.1
(10aa)
1.8
(3aa)
2.5
(4aa)
3.1
(5aa)
6.1
(10aa)
4.3
(7aa)
3.7
(6aa)
1.8
(3aa)
6.1
(10aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-159 DM1GRC2E00006D05 4,036,085 4,074,450 38,366

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.