CDS Information : DMR_38130

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	4,318,850 / 4,317,783 / -
Location	complement(4317783..4318850)
Type	CDS
Length	1,068 bp (355 aa)

Product	NAD-dependent epimerase/dehydratase family protein
Gene name
Functional category	Unclassified - uncharacterized protein
EC number
Note	Belongs to the NAD-dependent epimerase/dehydratase family (IPR001509).
KEGG pathway
Sequence feature
References	Family/Domain:IPR001509

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-110 B0JUL3_MICAN NAD-dependent epimerase/dehydratase Alignment 2 E=1e-110 A7I973_METB6 NAD-dependent epimerase/dehydratase Alignment 3 E=1e-109 A8YMJ2_MICAE Tyv protein Alignment 4 E=1e-109 Q6QW25_AZOBR Putative CDP tyvulose epimerase Alignment 5 E=1e-102 A0LBM1_MAGSM NAD-dependent epimerase/dehydratase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001509 NAD-dependent epimerase/dehydratase (Domain) PF01370   Epimerase IPR001509 NAD-dependent epimerase/dehydratase (Family) PF01370   Epimerase IPR016040 NAD(P)-binding domain (Domain) SSF51735   NAD(P)-binding Rossmann-fold domains G3DSA:3.40.50.720   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	355 amino acids
molecular mass	39,560.05 Da
pI	5.56
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.8 (24aa) 8.2 (29aa) 10.7 (38aa) 5.1 (18aa) 4.5 (16aa) 1.7 (6aa) 3.7 (13aa) 1.4 (5aa) 9.9 (35aa) 5.4 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.5 (16aa) 1.4 (5aa) 4.5 (16aa) 2.3 (8aa) 3.4 (12aa) 4.8 (17aa) 0.8 (3aa) 7.6 (27aa) 7.3 (26aa) 6.2 (22aa)

>DMR_38130 NAD-dependent epimerase/dehydratase family protein
ATGCAGACCATGTTGGTGACCGGCGGCGCCGGATTCGTGGGCAGCAATCTGGCCGTGGCC
TTCAAGCGCAAATATCCCGAGCGCACGGTCATCGTGCTCGATAACCTCAAGCGGCGCGGT
TCGGAATTCAACGTGCCCCGGCTGGTGGCCGAGGGCATCCGGTTTATCCACGGCGACATC
CGCAATCCCGAGGACATGGAGTTCGACGACAAGATCGACGTGCTGCTGGAATGCTCAGCC
GAGCCGTCGGTGCTGGCCGGCTTTGGCGGTTCGCCCAAGTACCTCATCAACACCAACCTG
ACCGGCACCATCAACTGCCTGGAAGTGGCCCGTAAAAACGCCGCCGACGTGGTGTTTCTC
TCCACCAGCCGGGTCTATCCCTACGATCCCATCAACGCCATCGGCCTGCGCGAGGAAGAA
TCGCGCTTCGTGTGGCAGGCCGGGGACGGGCCGCGCGGCTGGAGCGAAGCGGGCGTGGAC
ATCGACTTTGACTTAAACGGTCCCAAGTCCATGTACGGCGCGACCAAGCTCTGTTCGGAA
TTCGTGCTGCGCGAATACGAAGCCATGTACGGCGTGCGCAGCGTCATCAACCGCTGCGGC
GTCATCGCCGGTCCCTGGCAGTTCGGCAAGGTCGACCAGGGCGTGTTCTCGCTGTGGGTC
CAGGCCCATTATTTCAAACGCAAGCTCTCCTACATCGGCTTTGGCGGCCTGGGCAAGCAG
GTGCGCGATCTGCTCCATATCGACGACTTGTTCGATCTGCTCGATCTGCAGCTGGCCGAC
CTTGAGAAAGCCAAGGGCAAGGTGTACAATGTCGGCGGCGGCAGGGAAACCAGCCTGTCG
CTTCTGGAGACCACCCGCCTTTGCGAGCAGCTCACCGGCAACGCCATCGAGATACGGCGC
GATCCGGTCAATCGGCCGGCCGATCTGGCCATCTACATCGGCGACAACCGCCGGGTGACG
GCCGACTATGGGTGGAAGCCCAAGCGGAGCGCGGAAACGGTCCTGACGGACCTCTTTGAC
TGGGTCCGCGACAACGAAGCGAGCCTGCGCACGCTCTCCGGCCTCTAA


>DMR_38130 NAD-dependent epimerase/dehydratase family protein
MQTMLVTGGAGFVGSNLAVAFKRKYPERTVIVLDNLKRRGSEFNVPRLVAEGIRFIHGDI
RNPEDMEFDDKIDVLLECSAEPSVLAGFGGSPKYLINTNLTGTINCLEVARKNAADVVFL
STSRVYPYDPINAIGLREEESRFVWQAGDGPRGWSEAGVDIDFDLNGPKSMYGATKLCSE
FVLREYEAMYGVRSVINRCGVIAGPWQFGKVDQGVFSLWVQAHYFKRKLSYIGFGGLGKQ
VRDLLHIDDLFDLLDLQLADLEKAKGKVYNVGGGRETSLSLLETTRLCEQLTGNAIEIRR
DPVNRPADLAIYIGDNRRVTADYGWKPKRSAETVLTDLFDWVRDNEASLRTLSGL

NBRC No.	clone name	start	stop	length(bp)
G11-001-170	DM1GRC2E00017H11	4,295,928	4,330,575	34,648

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.