CDS Information : DMR_40940

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	4,633,952 / 4,632,897 / -
Location	complement(4632897..4633952)
Type	CDS
Length	1,056 bp (351 aa)

Product	magnetosome protein MamK
Gene name	mamK
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number
Note	Belongs to the Actin/actin-like domain(IPR004000).
KEGG pathway
Sequence feature
References	Uniprot:Q2W8Q6 Pubmed:17085581,16373532

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=7e-70 Q1NXX5_9DELT Actin/actin-like Alignment 2 E=1e-68 A0L9W7_MAGSM Actin-like ATPase Alignment 3 E=2e-65 Q6NE59_9PROT MamK protein MamK protein, MreB-actin-like Magnetosome protein MamK Alignment 4 E=6e-64 Q2W8Q6_MAGMM Actin-like ATPase Alignment 5 E=2e-48 Q1NXX3_9DELT Actin-like ATPase involved in cell morphogenesis-like Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR004000 Actin/actin-like (Family) SM00268   no description PTHR11937   ACTIN IPR013126 Heat shock protein 70 (Family) PS00297   HSP70_1 IPR018181 Heat shock protein 70, conserved site (Conserved_site) PS00297   HSP70_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	351 amino acids
molecular mass	37,943.76 Da
pI	5.48
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.3 (29aa) 8.8 (31aa) 10.8 (38aa) 7.4 (26aa) 2.3 (8aa) 0.3 (1aa) 3.4 (12aa) 2.8 (10aa) 9.1 (32aa) 6.6 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.3 (15aa) 1.1 (4aa) 3.4 (12aa) 2.8 (10aa) 2 (7aa) 6.6 (23aa) 1.7 (6aa) 4.8 (17aa) 6.8 (24aa) 6.6 (23aa)

>DMR_40940 magnetosome protein MamK
ATGTCCGGAAGCAACGTGCTGAACATCGGGATCGACCTGGGCACGTCCCGAAGCGTGATC
GCCTGCGACAACGGAGTCCGGACGTTCATCTCGAGCATTGTCGGTTACCCCAAGGACGCC
ATCTCCAAAAAGTTGCTGGGCAAAGATGTCGTCTTTGGCGAAGAAGCGGCCAAAAACAGG
CTGGCTCTGGAGATGCGGCGCCCTTTTGAAAAGGGTATGCTCAAATTTTCCAATCTCCAG
GATCTCAGCTCGGCGGAATTTGAACGCTACAAAGGCGTGGCCCGGGATCTGCTCCACCAT
CTTGTGGGGCTTGTGCGCAAGGAGTCGCCCCAGGCCCAGGTGGTGCGGGCCGTTATCGGT
GCCCCGGCCCTGGCCAGCACCCAGAACAAGAAAACCTTGATTGAAATCACCAAGGGCATC
CTCGACGACGTGATGATCACGTCCGAACCGTTCGCCGTGGCCTACGGCCTGGGCATCCTC
AACAACGCCCTGATCGTGGACATCGGGGCCGGCACCGTGGACCTGTGCCGCATGTCGGGG
GTCATCCCCACCGAAGCGGACCAGATCACCCTGACCAAGGCCGGCGACCATATCGACGAG
GTGCTGCTGGACCTGATCAAGACCCAGCATGCCGAAGTCGACGTCACACTCAACATGGTC
AAACGGGTCAAAGAGGAAAACGCCACCATTTCCGAGAAAGGGGAACGGGTGATGGCCCTG
CTGCCCATAAAGGGCAAGCCTACGTCGGTGGACGTCACCGATGCGCTGCACGAGGCCTGC
CGGTCTATCATTCCGGACATCGTGGGCGGCATCCGGTCGCTGGTCGCCTCCTTTGATCCG
GAATTCCAGGATTCCCTCAAGCAAAACGTCGTGCTGGCCGGCGGCGGCAGCCAGATCGGC
GGCATGGCCCGGCTGATTGAAGCCTACATGCAGGAGCATCTGGGGTATGGCAAGGTGAGC
CGGGTGGAAGAGCCGCTATACGCCGGAGCCAACGGCGGACTTCTGCTTTGCAAGGATATG
CCTTCGGATTATTGGGACGAGCTGCGAAAGGATTAA


>DMR_40940 magnetosome protein MamK
MSGSNVLNIGIDLGTSRSVIACDNGVRTFISSIVGYPKDAISKKLLGKDVVFGEEAAKNR
LALEMRRPFEKGMLKFSNLQDLSSAEFERYKGVARDLLHHLVGLVRKESPQAQVVRAVIG
APALASTQNKKTLIEITKGILDDVMITSEPFAVAYGLGILNNALIVDIGAGTVDLCRMSG
VIPTEADQITLTKAGDHIDEVLLDLIKTQHAEVDVTLNMVKRVKEENATISEKGERVMAL
LPIKGKPTSVDVTDALHEACRSIIPDIVGGIRSLVASFDPEFQDSLKQNVVLAGGGSQIG
GMARLIEAYMQEHLGYGKVSRVEEPLYAGANGGLLLCKDMPSDYWDELRKD

NBRC No.	clone name	start	stop	length(bp)
G11-001-183	DM1GRC2E00006G12	4,607,285	4,644,998	37,714

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.