CDS Information : DMR_41020

Display	1000bp 10000bp 100000bp Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	4,639,676 / 4,638,771 / -
Location	complement(4638771..4639676)
Type	CDS
Length	906 bp (301 aa)

Product	magnetosome protein MamM
Gene name	mamM
Functional category	Unclassified - uncharacterized protein
EC number
Note	Belongs to the Cation efflux protein family(IPR002524).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=4e-36 Q6NE57_9PROT MamM protein Magnetosome protein MamM, Cation efflux protein family Magnetosome protein MamM Alignment 2 E=4e-35 Q2W8Q4_MAGMM Predicted Co/Zn/Cd cation transporters Alignment 3 E=7e-35 Q93DY6_9PROT Magnetosome protein MamB Magnetosome protein MamB, Cation efflux protein family Alignment 4 E=2e-34 Q6NE50_9PROT Magnetosome protein MamB Alignment 5 E=1e-33 Q2W8L4_MAGMM Predicted Co/Zn/Cd cation transporters Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002524 Cation efflux protein (Family) PF01545   Cation_efflux TIGR01297   CDF: cation diffusion facilitator family tr PTHR11562   CATION EFFLUX PROTEIN/ ZINC TRANSPORTER
SignalP	No significant hit
TMHMM	Transmembrane 6
SOSUI	Transmembrane 5

size of protein	301 amino acids
molecular mass	32,379.72 Da
pI	6.25
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12 (36aa) 12.3 (37aa) 8.3 (25aa) 7 (21aa) 5.3 (16aa) 1.7 (5aa) 2.7 (8aa) 2.3 (7aa) 7.3 (22aa) 5.6 (17aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.6 (17aa) 3 (9aa) 3 (9aa) 4 (12aa) 1.7 (5aa) 4.3 (13aa) 1 (3aa) 4 (12aa) 6 (18aa) 3 (9aa)

>DMR_41020 magnetosome protein MamM
ATGCGAAAAGTCTGTCAGGATTGCCTCAAATGCGTCAATAACGTCGGCTGGATAGGCTTG
TGGACGAGTCTTTTCCTGGCGGTGTTGCAAGGGTCTGTCGGCGTCACAACCGGAAGCAAG
GCCTGTTTGGCCATTGCCTTGCAGTCGCTTTGCGACATCATCGGTTCCGGCATGATGATC
CTGACCCAGAAAGTCAGTTCCAAGCCGGCCAATGACGATTTCCCTTTTGGCTACGGCAAG
GTGGAATTCGTGGCCGCCGCTTTTACGTGCCTGTTTTTCGCGGCCGCCACCACGATCCTG
ACGGTCTACGACATCGAGGATATTTTCGGCACGCCAACGGCCCAGTCCGATTTTACGCCG
TTTCTCGTGGCCGTGGTCTCGGTCATCGTCAATGAGCGCATGTTTCGCTATCTGCAATGC
GTGGCCCATCAGGCCAAGAGCCAGACCATCCTGGCCAATGCCTGGGCCAGCCGGGCCGGT
ATGTATTCCGCCGCCGTGGTCGGGCTGTGTTCCGTGGGGCCGTGGGTCGGCGTGCCGGTC
CTGGACGACATCGGCTCCCTGATTGTCATCGCGCTCATTGCCAAGATCATTTTCCAGGTC
TTCCTGGAAGCGGTGCGGGGACTGCTGGACCATTCGGTCAATGAGCAATATGAGGAGCGT
ATAGAGACTATAGCCTTGGGCGTGGCCGGCGTGACCGACGTGGGGCGCATCAAGACCAAG
CAGATGGGCAGAAAGGTCTGGGCCGACGTAGACATCTTCGTCGACCCGGCCAACACAGTT
TCGGATGGCCGCCGCATTGCCGATGCGGTACGCAGCGCGCTGCTGGCGGCTCTGGACGAC
TTTGAAAACGTCCATGTCAATTTCAAGCCTGTAAAAGCGCGTACGATGTGTGGGGCGCAA
GCATGA


>DMR_41020 magnetosome protein MamM
MRKVCQDCLKCVNNVGWIGLWTSLFLAVLQGSVGVTTGSKACLAIALQSLCDIIGSGMMI
LTQKVSSKPANDDFPFGYGKVEFVAAAFTCLFFAAATTILTVYDIEDIFGTPTAQSDFTP
FLVAVVSVIVNERMFRYLQCVAHQAKSQTILANAWASRAGMYSAAVVGLCSVGPWVGVPV
LDDIGSLIVIALIAKIIFQVFLEAVRGLLDHSVNEQYEERIETIALGVAGVTDVGRIKTK
QMGRKVWADVDIFVDPANTVSDGRRIADAVRSALLAALDDFENVHVNFKPVKARTMCGAQ
A

NBRC No.	clone name	start	stop	length(bp)
G11-001-183	DM1GRC2E00006G12	4,607,285	4,644,998	37,714
G11-001-184	DM1GRC2E00010H02	4,635,510	4,677,671	42,162

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.