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CDS Information : DMR_41070

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,642,789 / 4,641,932 / -
Location complement(4641932..4642789)
Type CDS
Length 858 bp (285 aa)

close this sectionAnnotation

Product putative magnetosome protein MamO
Synonym: putative peptidase
Gene name mamO
Functional category Unclassified
- uncharacterized protein
EC number
Note Contains one Peptidase S1 and S6, chymotrypsin/Hap domain (IPR001254).
KEGG pathway
Sequence feature
References Family/Domain:IPR001254
Merops:S01C

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-39A0L9X5_MAGSMPeptidase S1 and S6, chymotrypsin/HapAlignment
2E=1e-37Q2RS94_RHORTPeptidase S1C, Do precursorAlignment
3E=1e-37Q5LSY9_SILPOPeriplasmic serine protease, DO/DeqQ familyAlignment
4E=3e-37A8TRP8_9PROTPeriplasmic serine protease, DO/DeqQ family proteinAlignment
5E=3e-37A8VFJ9_9DELTProtease Do precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001254 Peptidase S1 and S6, chymotrypsin/Hap (Domain)
 [159-280]  7.6e-10 PF00089
PF00089   Trypsin
IPR009003 Peptidase, trypsin-like serine and cysteine (Domain)
 [64-281]  2.8e-51 SSF50494
SSF50494   Trypsin-like serine proteases
SignalP
 [1-28]  1 Signal
Bacteria, Gram-negative   
TMHMM
 [12-34]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [10-32]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 285 amino acids
molecular mass 29,230.56 Da
pI 9.85
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.5
(30aa)
11.2
(32aa)
8.8
(25aa)
4.9
(14aa)
3.9
(11aa)
0.4
(1aa)
6.7
(19aa)
2.1
(6aa)
13.3
(38aa)
6
(17aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.7
(19aa)
0
(0aa)
4.6
(13aa)
3.5
(10aa)
1.8
(5aa)
4.2
(12aa)
0.4
(1aa)
4.2
(12aa)
5.6
(16aa)
1.4
(4aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-183 DM1GRC2E00006G12 4,607,285 4,644,998 37,714
G11-001-184 DM1GRC2E00010H02 4,635,510 4,677,671 42,162

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.