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CDS Information : DMR_41090

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,646,791 / 4,645,163 / -
Location complement(4645163..4646791)
Type CDS
Length 1,629 bp (542 aa)

close this sectionAnnotation

Product hypothetical protein MamP
Gene name mamP
Functional category Unclassified
- uncharacterized protein
EC number
Note Contains at least two PDZ/DHR/GLGF domains (IPR001478).
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-20A4M5C7_9DELTProtease Do precursorAlignment
2E=2e-19A5FY46_ACICJProtease Do precursorAlignment
3E=3e-19A0Z444_9GAMMATPaseAlignment
4E=1e-18Q11HS9_MESSBProtease Do precursorAlignment
5E=2e-18A1AT83_PELPDProtease Do precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001478 PDZ/DHR/GLGF (Domain)
 [104-186]  1.4e-06 SM00228 [211-293]  4.9e-10 SM00228 [340-403]  0.27 SM00228
SM00228   no description
 [103-199]  1.2e-17 SSF50156 [209-307]  7.5e-24 SSF50156 [324-416]  4.7e-12 SSF50156
SSF50156   PDZ domain-like
 [95-161]  9.833 PS50106 [192-293]  10.838 PS50106
PS50106   PDZ
 [95-161]  8.5e-07 PF00595 [233-290]  7.1e-09 PF00595
PF00595   PDZ
IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis (Domain)
 [440-538]  0.00024 G3DSA:3.30.420.130
G3DSA:3.30.420.130   no description
 [458-535]  4.1e-05 SSF53146
SSF53146   Nitrogenase accessory factor-like
SignalP No significant hit
TMHMM
 [25-47]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [23-45]  Transmembrane [123-145]  Transmembrane
Transmembrane 2   

close this sectionCalculated information (Amino acid sequence)

size of protein 542 amino acids
molecular mass 55,490.04 Da
pI 5.51
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.4
(78aa)
10.7
(58aa)
9.8
(53aa)
5.4
(29aa)
1.8
(10aa)
0.7
(4aa)
7.4
(40aa)
2.4
(13aa)
11.3
(61aa)
5
(27aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.6
(25aa)
0.6
(3aa)
3
(16aa)
6.1
(33aa)
1.3
(7aa)
3.1
(17aa)
0.6
(3aa)
4.1
(22aa)
4.6
(25aa)
3.3
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-184 DM1GRC2E00010H02 4,635,510 4,677,671 42,162

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.