small fontnormal fontlarge fontmail to

CDS Information : DMR_41100

close allopen/close all

close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,648,092 / 4,646,821 / -
Location complement(4646821..4648092)
Type CDS
Length 1,272 bp (423 aa)

close this sectionAnnotation

Product hypothetical protein MamT
Gene name mamT
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-11Q64CE7_9ARCHPutative uncharacterized proteinAlignment
2E=5e-09Q12UC2_METBUDinitrogenase iron-molybdenum cofactor biosynthesisAlignment
3E=7e-09Q2RIL4_MOOTADinitrogenase iron-molybdenum cofactor biosynthesisAlignment
4E=1e-08A0L9X5_MAGSMPeptidase S1 and S6, chymotrypsin/HapAlignment
5E=4e-08Q2WAB1_MAGMMPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001478 PDZ/DHR/GLGF (Domain)
 [151-229]  9.009 PS50106
PS50106   PDZ
 [158-251]  2.5e-16 SSF50156
SSF50156   PDZ domain-like
 [160-242]  1.5e-06 SM00228
SM00228   no description
IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis (Domain)
 [279-393]  6.9e-14 SSF53146
SSF53146   Nitrogenase accessory factor-like
 [280-393]  1.1e-17 G3DSA:3.30.420.130
G3DSA:3.30.420.130   no description
IPR009056 Cytochrome c, monohaem (Domain)
 [101-218]  7.368 PS51007
PS51007   CYTC
SignalP No significant hit
TMHMM
 [13-33]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [12-34]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 423 amino acids
molecular mass 43,891.83 Da
pI 9.5
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.4
(61aa)
9.9
(42aa)
8
(34aa)
3.8
(16aa)
1.9
(8aa)
1.4
(6aa)
9.9
(42aa)
2.6
(11aa)
9.7
(41aa)
3.5
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.6
(28aa)
1.7
(7aa)
3.5
(15aa)
6.1
(26aa)
2.1
(9aa)
4.5
(19aa)
1.4
(6aa)
3.3
(14aa)
3.8
(16aa)
1.7
(7aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-184 DM1GRC2E00010H02 4,635,510 4,677,671 42,162

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.