CDS Information : DMR_41130

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Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon	chromosome
Start / Stop / Direction	4,650,283 / 4,649,657 / -
Location	complement(4649657..4650283)
Type	CDS
Length	627 bp (208 aa)

Product	magnetosome protein MamQ Synonym: LemA family protein
Gene name	mamQ
Functional category	Unclassified - uncharacterized protein
EC number
Note	Belongs to the LemA family(IPR007156).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=5e-23 Q9X056_THEMA LemA protein Alignment 2 E=2e-22 A5INL5_THEP1 LemA family protein precursor Alignment 3 E=2e-22 B1L8N0_THESQ LemA family protein precursor Alignment 4 E=1e-20 A5UN49_METS3 LemA protein Alignment 5 E=3e-20 Q2NE18_METST Conserved hypothetical membrane-spanning protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR007156 LemA (Family) PF04011   LemA
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	208 amino acids
molecular mass	22,769.31 Da
pI	5.81
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.9 (33aa) 7.2 (15aa) 12 (25aa) 3.4 (7aa) 5.3 (11aa) 0.5 (1aa) 4.3 (9aa) 3.4 (7aa) 5.8 (12aa) 4.3 (9aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.8 (8aa) 1 (2aa) 4.8 (10aa) 3.4 (7aa) 4.8 (10aa) 4.8 (10aa) 1 (2aa) 4.3 (9aa) 4.3 (9aa) 5.8 (12aa)

>DMR_41130 magnetosome protein MamQ
GTGGCCGAGATGCCCATGGATGTCCGCCTGCGCTGGCTCCTGGGCTTTTGCTTCCTGGTT
TTGGCAGCGGCGACCATCTATTATTACAACACGCTTATCGGCGTGGAGCACGACGTCATG
AAGTCGCGGGCCCAGGTGGACGTCTTCATGCAGCGGCGAAACGACATTTCCATCAATCTG
GCCAAGGCCTTGCAGGACTATTCCCATTACGAGAAAAACGTCCTGACCGAAATCGTCAAG
CTGCGCACGGCCCTTGGCGGCGAAGGGGCCAATCCGGGAGCCGTTGAGGAATTGCTGAAA
AACGCCGGCCCGGCCGCCCCGGCCGGGACTGCTCCGGCCGGAGCCGCCGGGCTGTCCTCC
GCCGCCCTGGCCCGGCTGTTGGCCGTGGCCGAACAATACCCCGATCTCAAGCTTTCAGCC
AATTTCCAGAGCCTCATGGCCGCCCTGGTGGAAGTGGAAAAGGATCTGGCCGGGGAGCGG
GTCAAGTTCAACGAAGCCATCCTGGCCTACGCCAATTACGTGGACAAGTTCCCCTCGAAT
TTTTTTGCACTGTGCTTTGGCTTTAGGATGACGCCTTACTTCAAGGCGACCCAGGACGCC
CAGGTGCTGACGCCCATCAGTTACTAG


>DMR_41130 magnetosome protein MamQ
MAEMPMDVRLRWLLGFCFLVLAAATIYYYNTLIGVEHDVMKSRAQVDVFMQRRNDISINL
AKALQDYSHYEKNVLTEIVKLRTALGGEGANPGAVEELLKNAGPAAPAGTAPAGAAGLSS
AALARLLAVAEQYPDLKLSANFQSLMAALVEVEKDLAGERVKFNEAILAYANYVDKFPSN
FFALCFGFRMTPYFKATQDAQVLTPISY

NBRC No.	clone name	start	stop	length(bp)
G11-001-184	DM1GRC2E00010H02	4,635,510	4,677,671	42,162

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.