small fontnormal fontlarge fontmail to

CDS Information : DMR_42280

close allopen/close all

close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,777,150 / 4,776,449 / -
Location complement(4776449..4777150)
Type CDS
Length 702 bp (233 aa)

close this sectionAnnotation

Product superoxide dismutase Fe
Gene name sodB
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number 1.15.1.1
Note
KEGG pathway
Sequence feature
References Uniprot:Q8GR34 Pubmed:12761175
Uniprot:P09157 Pubmed:3305077,6346322

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-66A0LNT8_SYNFMSuperoxide dismutaseAlignment
2E=2e-63Q0AGS3_NITECSuperoxide dismutaseAlignment
3E=4e-63Q606F0_METCASuperoxide dismutase, FeAlignment
4E=9e-63Q82W28_NITEUManganese and iron superoxide dismutase
SODM
Alignment
5E=1e-62Q2YBR2_NITMUSuperoxide dismutaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001189 Manganese and iron superoxide dismutase (Family)
 [38-124]  5.7e-26 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
 [124-232]  1.1e-38 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
 [38-123]  2.9e-31 PF00081
PF00081   Sod_Fe_N
 [133-232]  6e-29 PD000475
PD000475   Q7NZQ4_CHRVO_Q7NZQ4;
 [126-232]  1.7e-62 PF02777
PF02777   Sod_Fe_C
 [197-204]  PS00088
PS00088   SOD_MN
 [37-233]  3.8e-88 PIRSF000349
PIRSF000349   Superoxide dismutase, Mn/Fe specific
 [37-232]  5.6e-80 PTHR11404
PTHR11404   SUPEROXIDE DISMUTASE 2
IPR006311 Twin-arginine translocation pathway, signal sequence (Conserved_site)
 [7-36]  0.25 TIGR01409
TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc
 [1-36]  9.002 PS51318
PS51318   TAT
IPR006311 Twin-arginine translocation pathway signal (Domain)
 [7-36]  0.25 TIGR01409
TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc
IPR017909 Twin arginine translocation signal, Tat (Domain)
 [1-36]  9.002 PS51318
PS51318   TAT
IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain)
 [38-124]  5.7e-26 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
 [38-123]  2.9e-31 PF00081
PF00081   Sod_Fe_N
IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain)
 [124-232]  1.1e-38 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
 [126-232]  1.7e-62 PF02777
PF02777   Sod_Fe_C
IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site)
 [197-204]  PS00088
PS00088   SOD_MN
SignalP
 [1-36]  0.74 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 233 amino acids
molecular mass 25,233.82 Da
pI 9.45
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.3
(38aa)
7.3
(17aa)
11.6
(27aa)
1.3
(3aa)
4.7
(11aa)
3
(7aa)
5.2
(12aa)
1.3
(3aa)
8.6
(20aa)
4.7
(11aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3
(7aa)
0
(0aa)
5.2
(12aa)
4.3
(10aa)
3.4
(8aa)
6.4
(15aa)
1.7
(4aa)
3.4
(8aa)
3.4
(8aa)
5.2
(12aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-187 DM1GRC2E00024A06 4,767,989 4,804,283 36,295

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.