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CDS Information : DMR_43510

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close this sectionGenomic map

Display Clone

Desulfovibrio magneticus RS-1 (= NBRC 104933) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon chromosome
Start / Stop / Direction 4,921,980 / 4,920,553 / -
Location complement(4920553..4921980)
Type CDS
Length 1,428 bp (475 aa)

close this sectionAnnotation

Product putative Fe hydrogenase
Gene name
Functional category Metabolism
- Energy Metabolism
EC number 1.12.7.2
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-132Q315X0_DESDGFerredoxin hydrogenaseAlignment
2E=1e-130Q67J76_SYMTHIron hydrogenaseAlignment
3E=1e-127Q6AR16_DESPSProbable Fe-center hydrogenase, large subunitAlignment
4E=1e-125B0A731_9CLOTPutative uncharacterized proteinAlignment
5E=1e-119A5N6G1_CLOK5Predicted Fe-Fe hydrogenase 2Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Conserved_site)
 [22-33]  PS00198
PS00198   4FE4S_FER_1
IPR001450 4Fe-4S ferredoxin, iron-sulfur binding (Domain)
 [15-38]  1.8e-08 PF00037 [45-68]  0.011 PF00037
PF00037   Fer4
 [22-33]  PS00198
PS00198   4FE4S_FER_1
IPR003149 Iron hydrogenase, small subunit (Domain)
 [410-466]  2.3e-13 G3DSA:4.10.260.20
G3DSA:4.10.260.20   no description
 [411-470]  2.3e-16 PF02256
PF02256   Fe_hyd_SSU
IPR004108 Hydrogenase large subunit, C-terminal (Domain)
 [103-405]  5.6e-127 PF02906
PF02906   Fe_hyd_lg_C
IPR009016 Iron hydrogenase (Domain)
 [51-468]  5.2e-120 SSF53920
SSF53920   Fe-only hydrogenase
IPR017896 4Fe-4S ferredoxin, iron-sulpur binding domain (Domain)
 [13-42]  10.936 PS51379 [43-72]  8.827 PS51379
PS51379   4FE4S_FER_2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 475 amino acids
molecular mass 48,494.65 Da
pI 5.79
aa composition
AlaValLeuIlePheTrpProMetGlySer
19.4
(92aa)
9.7
(46aa)
8.4
(40aa)
1.9
(9aa)
3.6
(17aa)
0.6
(3aa)
7.6
(36aa)
1.7
(8aa)
9.9
(47aa)
4
(19aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.8
(23aa)
4
(19aa)
1.1
(5aa)
2.3
(11aa)
1.1
(5aa)
2.1
(10aa)
2.3
(11aa)
5.7
(27aa)
4
(19aa)
5.9
(28aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G11-001-192 DM1GRC2E00005G04 4,892,041 4,927,244 35,204
G11-001-193 DM1GRC2E00010A10 4,902,857 4,940,072 37,216
G11-001-194 DM1GRC2E00029B01 4,919,173 4,953,086 33,914

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.