small fontnormal fontlarge fontmail to

CDS Information : DMR_p1_00310

close allopen/close all

close this sectionGenomic map

Display

Desulfovibrio magneticus RS-1 (= NBRC 104933) plasmid1

Legend Jump
Overview 
Genome

close this sectionLocation

Organism Desulfovibrio magneticus RS-1 (= NBRC 104933)
Replicon plasmid1
Start / Stop / Direction 28,389 / 29,438 / +
Location 28389..29438
Type CDS
Length 1,050 bp (349 aa)

close this sectionAnnotation

Product thiamine pyrophosphate-dependent dehydrogenases E1 component beta subunit
Gene name
Functional category Unclassified
- putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR005476
Family/Domain:IPR009014
Family/Domain:IPR005475

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-100A0UXT4_CLOCETransketolase-likeAlignment
2E=3e-84A7BPK5_9GAMMPyruvate dehydrogenase, E1 component, beta subunitAlignment
3E=5e-82B0ING5_RHOPATransketolase central regionAlignment
4E=1e-81Q6N2X6_RHOPAPutative acetoin dehydrogenase (TPP-dependent) beta chainAlignment
5E=7e-80Q2ITF9_RHOP2Acetoin dehydrogenase (TPP-dependent) beta chainAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR005475 Transketolase, central region (Domain)
 [24-203]  6.4e-32 PF02779
PF02779   Transket_pyr
IPR005476 Transketolase, C-terminal (Domain)
 [216-339]  7.3e-45 PF02780
PF02780   Transketolase_C
IPR009014 Transketolase, C-terminal-like (Domain)
 [210-348]  3.7e-42 SSF52922
SSF52922   TK C-terminal domain-like
 [220-349]  2e-34 G3DSA:3.40.50.920
G3DSA:3.40.50.920   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 349 amino acids
molecular mass 37,534.03 Da
pI 6.32
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.3
(50aa)
8.6
(30aa)
9.2
(32aa)
4.3
(15aa)
3.7
(13aa)
1.4
(5aa)
6.3
(22aa)
2.9
(10aa)
9.5
(33aa)
3.7
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.7
(13aa)
0.6
(2aa)
2
(7aa)
2.6
(9aa)
2.3
(8aa)
3.7
(13aa)
2.3
(8aa)
6.9
(24aa)
7.2
(25aa)
4.9
(17aa)

open this sectionSequence