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CDS Information : GAU_0002

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close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 1,753 / 2,865 / +
Location 1753..2865
Type CDS
Length 1,113 bp (370 aa)

close this sectionAnnotation

Product DNA polymerase III beta subunit
Gene name dnaN
Functional category Genetic Information Processing
- Replication and Repair
EC number 2.7.7.7
Note
KEGG pathway map:03030 KO:K02338
Sequence feature
References Family/Domain:IPR001001
Uniprot:Q8KQT1 Pubmed:12039751

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-60Q3A8M7_PELCDDNA polymerase III, beta subunitAlignment
2E=4e-60Q21PW3_SACD2DNA polymerase III, beta subunitAlignment
3E=9e-60A1B5X4_PARDPDNA polymerase III, beta subunitAlignment
4E=2e-59B2EN83_9BACTDNA polymerase III, beta subunitAlignment
5E=5e-59A0L3I8_MAGSMDNA polymerase III, beta subunitAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001001 DNA polymerase III, beta chain (Family)
 [244-367]  2.7e-27 PF02768
PF02768   DNA_pol3_beta_3
 [17-364]  6.6e-107 SM00480
SM00480   no description
 [1-118]  3.3e-32 G3DSA:3.10.150.10 [124-247]  2.6e-29 G3DSA:3.10.150.10 [247-368]  6.2e-30 G3DSA:3.10.150.10
G3DSA:3.10.150.10   no description
 [1-368]  4.4e-97 TIGR00663
TIGR00663   dnan: DNA polymerase III, beta subunit
 [128-242]  2.2e-29 PF02767
PF02767   DNA_pol3_beta_2
 [1-119]  6.8e-39 PF00712
PF00712   DNA_pol3_beta
IPR022634 DNA polymerase III, beta chain, N-terminal (Domain)
 [1-119]  6.8e-39 PF00712
PF00712   DNA_pol3_beta
IPR022635 DNA polymerase III, beta chain, C-terminal (Domain)
 [244-367]  2.7e-27 PF02768
PF02768   DNA_pol3_beta_3
IPR022637 DNA polymerase III, beta chain, central (Domain)
 [128-242]  2.2e-29 PF02767
PF02767   DNA_pol3_beta_2
IPR024693 DNA polymerase III beta, domain (Domain)
 [1-118]  3.3e-32 G3DSA:3.10.150.10 [124-247]  2.6e-29 G3DSA:3.10.150.10 [247-368]  6.2e-30 G3DSA:3.10.150.10
G3DSA:3.10.150.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 370 amino acids
molecular mass 41,123.24 Da
pI 5.37
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.9
(33aa)
6.2
(23aa)
11.1
(41aa)
5.1
(19aa)
4.3
(16aa)
0.8
(3aa)
7.6
(28aa)
2.7
(10aa)
5.1
(19aa)
6.8
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(25aa)
0.5
(2aa)
3
(11aa)
2.4
(9aa)
1.6
(6aa)
5.1
(19aa)
1.1
(4aa)
7
(26aa)
5.1
(19aa)
8.6
(32aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.