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CDS Information : GAU_0006

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close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 8,005 / 6,290 / -
Location complement(6290..8005)
Type CDS
Length 1,716 bp (571 aa)

close this sectionAnnotation

Product methyl-accepting chemotaxis protein
Gene name
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number
Note
KEGG pathway map:02030 KO:K03406
Sequence feature
References Family/Domain:IPR003660
Family/Domain:IPR004089

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-41Q74EC9_GEOSLMethyl-accepting chemotaxis proteinAlignment
2E=2e-40Q39RS8_GEOMGMethyl-accepting chemotaxis sensory transducerAlignment
3E=3e-40B1DA11_9BACLMethyl-accepting chemotaxis sensory transducerAlignment
4E=9e-39Q748Q9_GEOSLMethyl-accepting chemotaxis proteinAlignment
5E=2e-38Q2RZD6_SALRDMethyl-accepting chemotaxis transducerAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003660 Histidine kinase, HAMP region (Domain)
 [214-266]  1.1e-10 SM00304
SM00304   no description
 [214-266]  10.625 PS50885
PS50885   HAMP
 [194-263]  4.1e-08 PF00672
PF00672   HAMP
IPR004089 Bacterial chemotaxis sensory transducer (Domain)
 [326-565]  9.1e-25 PF00015
PF00015   MCPsignal
 [281-563]  2.5e-36 SM00283
SM00283   no description
 [271-521]  34.655 PS50111
PS50111   CHEMOTAXIS_TRANSDUC_2
SignalP
 [1-24]  0.657 Signal
Bacteria, Gram-negative   
TMHMM
 [65-84]  Transmembrane (i-o) [89-108]  Transmembrane (o-i) [129-151]  Transmembrane (i-o) [161-183]  Transmembrane (o-i) [195-217]  Transmembrane (i-o)
Transmembrane 5   
SOSUI
 [65-87]  Transmembrane [90-112]  Transmembrane [126-148]  Transmembrane [160-181]  Transmembrane [192-214]  Transmembrane
Transmembrane 5   

close this sectionCalculated information (Amino acid sequence)

size of protein 571 amino acids
molecular mass 61,101.04 Da
pI 6.81
aa composition
AlaValLeuIlePheTrpProMetGlySer
18.6
(106aa)
8.4
(48aa)
9.8
(56aa)
3.9
(22aa)
3
(17aa)
0.9
(5aa)
2.5
(14aa)
1.8
(10aa)
6
(34aa)
7.7
(44aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(33aa)
0.2
(1aa)
1.6
(9aa)
4.4
(25aa)
1.2
(7aa)
0.7
(4aa)
2.1
(12aa)
10.2
(58aa)
5.8
(33aa)
5.8
(33aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.