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CDS Information : GAU_0010

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close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 11,283 / 14,237 / +
Location 11283..14237
Type CDS
Length 2,955 bp (984 aa)

close this sectionAnnotation

Product DNA polymerase I
Synonym: POL I
Gene name polA
Functional category Genetic Information Processing
- Replication and Repair
EC number 2.7.7.7
Note
KEGG pathway map:03030 KO:K02335
Sequence feature
References Family/Domain:IPR002298
Uniprot:P00582 Pubmed:12463755

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q3A700_PELCDDNA polymerase IAlignment
2E=0A1ASW3_PELPDDNA polymerase IAlignment
3E=0A4MIV2_9DELTDNA polymerase IAlignment
4E=0Q74FR5_GEOSLDNA polymerase IAlignment
5E=0A5G8D3_GEOURDNA polymerase IAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001098 DNA-directed DNA polymerase (Domain)
 [809-828]  PS00447
PS00447   DNA_POLYMERASE_A
 [602-982]  1.5e-165 PF00476
PF00476   DNA_pol_A
 [741-947]  8.3e-109 SM00482
SM00482   no description
IPR001098 DNA-directed DNA polymerase (Family)
 [741-947]  8.3e-109 SM00482
SM00482   no description
 [602-982]  1.5e-165 PF00476
PF00476   DNA_pol_A
 [809-828]  PS00447
PS00447   DNA_POLYMERASE_A
IPR002298 DNA polymerase A (Family)
 [12-983]  TIGR00593
TIGR00593   pola: DNA polymerase I
IPR002421 5'-3' exonuclease (Domain)
 [186-286]  3.6e-47 PF01367
PF01367   5_3_exonuc
 [10-165]  1.1e-58 PF02739
PF02739   5_3_exonuc_N
 [9-277]  4.2e-98 SM00475
SM00475   no description
IPR002562 3'-5' exonuclease (Domain)
 [351-573]  1.1e-28 SM00474
SM00474   no description
 [460-573]  1.4e-26 PF01612
PF01612   3_5_exonuc
IPR008918 Helix-hairpin-helix motif, class 2 (Conserved_site)
 [188-223]  2.7e-14 SM00279
SM00279   no description
IPR008918 Helix-hairpin-helix motif, class 2 (Domain)
 [186-300]  4.8e-35 SSF47807
SSF47807   5' to 3' exonuclease, C-terminal subdomain
 [188-223]  2.7e-14 SM00279
SM00279   no description
IPR008918 Helix-hairpin-helix motif, class 2 (Region)
 [188-223]  2.7e-14 SM00279
SM00279   no description
IPR012337 Polynucleotidyl transferase, Ribonuclease H fold (Domain)
 [345-574]  2.2e-46 SSF53098
SSF53098   Ribonuclease H-like
IPR019760 DNA-directed DNA polymerase, family A, conserved site (Conserved_site)
 [809-828]  PS00447
PS00447   DNA_POLYMERASE_A
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 984 amino acids
molecular mass 107,249.37 Da
pI 4.99
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.7
(115aa)
8.3
(82aa)
11.6
(114aa)
4.9
(48aa)
3.5
(34aa)
0.8
(8aa)
5.7
(56aa)
1.4
(14aa)
7.5
(74aa)
5.1
(50aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.5
(54aa)
0.4
(4aa)
2.7
(27aa)
2.9
(29aa)
2.7
(27aa)
3.2
(31aa)
1.5
(15aa)
7.3
(72aa)
6.4
(63aa)
6.8
(67aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.