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CDS Information : GAU_0011

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close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 14,487 / 14,876 / +
Location 14487..14876
Type CDS
Length 390 bp (129 aa)

close this sectionAnnotation

Product putative pilin
Gene name
Functional category Unclassified
- putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P17836 Pubmed:2841299

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=4e-12Q2LVP3_SYNASTfp pilus assembly protein, major pilinAlignment
2E=2e-11Q74D23_GEOSLPilin domain proteinAlignment
3E=2e-11Q39VU1_GEOMGN-terminal methylationAlignment
4E=3e-11A1APK0_PELPDPilin domain protein precursorAlignment
5E=2e-10A4M0R4_9DELTPilin domain protein precursorAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001120 Prokaryotic N-terminal methylation site (PTM)
 [8-28]  PS00409
PS00409   PROKAR_NTER_METHYL
IPR012902 Prepilin-type cleavage/methylation, N-terminal (Domain)
 [7-30]  5.1e-09 TIGR02532
TIGR02532   IV_pilin_GFxxxE: prepilin-type N-terminal c
 [8-31]  4.3e-09 PF07963
PF07963   N_methyl
IPR012902 Prepilin-type cleavage/methylation, N-terminal (PTM)
 [7-30]  5.1e-09 TIGR02532
TIGR02532   IV_pilin_GFxxxE: prepilin-type N-terminal c
 [8-31]  4.3e-09 PF07963
PF07963   N_methyl
SignalP
 [1-29]  0.559 Signal
Bacteria, Gram-negative   
TMHMM
 [9-31]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [10-31]  Transmembrane [102-124]  Transmembrane
Transmembrane 2   

close this sectionCalculated information (Amino acid sequence)

size of protein 129 amino acids
molecular mass 13,651.58 Da
pI 8.2
aa composition
AlaValLeuIlePheTrpProMetGlySer
14
(18aa)
6.2
(8aa)
6.2
(8aa)
9.3
(12aa)
3.1
(4aa)
0.8
(1aa)
3.9
(5aa)
1.6
(2aa)
6.2
(8aa)
12.4
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.8
(10aa)
1.6
(2aa)
3.9
(5aa)
2.3
(3aa)
4.7
(6aa)
5.4
(7aa)
1.6
(2aa)
2.3
(3aa)
1.6
(2aa)
5.4
(7aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.