small fontnormal fontlarge fontmail to

CDS Information : GAU_0018

close allopen/close all

close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

Legend Jump
Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 25,125 / 26,777 / +
Location 25125..26777
Type CDS
Length 1,653 bp (550 aa)

close this sectionAnnotation

Product TldD/PmbA family protein
Gene name
Functional category Unclassified
- uncharacterized protein
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR002510 Merops:U62

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-132A0M2R1_GRAFKDNA gyrase modulator family proteinAlignment
2E=1e-131A4CJL2_9FLAOPutative modulator of DNA gyraseAlignment
3E=1e-131A8CVL5_9CHLRPeptidase U62, modulator of DNA gyrase precursorAlignment
4E=1e-131A8UJU0_9FLAOTwin-arginine translocation pathway signalAlignment
5E=1e-130A3I1N2_9SPHIPutative modulator of DNA gyraseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002510 Peptidase U62, modulator of DNA gyrase (Family)
 [73-384]  3.6e-38 PF01523
PF01523   PmbA_TldD
IPR006311 Twin-arginine translocation pathway, signal sequence (Conserved_site)
 [1-30]  9.487 PS51318
PS51318   TAT
 [2-30]  0.0026 TIGR01409
TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc
IPR006311 Twin-arginine translocation pathway signal (Domain)
 [2-30]  0.0026 TIGR01409
TIGR01409   TAT_signal_seq: Tat (twin-arginine transloc
IPR017909 Twin arginine translocation signal, Tat (Domain)
 [1-30]  9.487 PS51318
PS51318   TAT
SignalP
 [1-30]  1 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 550 amino acids
molecular mass 60,237.20 Da
pI 8.15
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.8
(65aa)
7.3
(40aa)
6.9
(38aa)
4.2
(23aa)
4.2
(23aa)
2.4
(13aa)
4.7
(26aa)
3.3
(18aa)
9.5
(52aa)
4.4
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.5
(30aa)
0.4
(2aa)
5.3
(29aa)
5.5
(30aa)
2.7
(15aa)
4.7
(26aa)
0.9
(5aa)
6
(33aa)
6.7
(37aa)
3.8
(21aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.