DOGAN: CDS Information : GAU

Display	Clone

Gemmatimonas aurantiaca T-27^T (= NBRC 100505^T) chromosome

Overview
Genome
Proteome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis (00010)

Pyruvate metabolism (00620)

Glyoxylate and dicarboxylate metabolism (00630)

Propanoate metabolism (00640)

Butanoate metabolism (00650)

Inositol metabolism (00031)

Inositol phosphate metabolism (00562)

Citrate cycle (TCA cycle) (00020)

Pentose phosphate pathway (00030)

Fructose and mannose metabolism (00051)

Galactose metabolism (00052)

Ascorbate and aldarate metabolism (00053)

Starch and sucrose metabolism (00500)

Aminosugars metabolism (00530)

Nucleotide sugars metabolism (00520)

Energy Metabolism

electron transport system (00190)

ATP synthesis (00193)

Sulfur metabolism (00920)

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1) (00061)

Fatty acid biosynthesis (path 2) (00062)

Fatty acid metabolism (00071)

Synthesis and degradation of ketone bodies (00072)

Sterols biosynthesis (00100)

Glycerolipid metabolism (00561)

Phospholipid degradation (00580)

Nucleotide Metabolism

Purine metabolism (00230)

Pyrimidine metabolism (00240)

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation (00910)

Arginine and proline metabolism (00330)

Histidine metabolism (00340)

Tyrosine metabolism (00350)

Phenylalanine metabolism (00360)

Tryptophan metabolism (00380)

Phenylalanine, tyrosine and tryptophan biosynthesis (00400)

Urea cycle and metabolism of amino groups (00220)

Alanine and aspartate metabolism (00252)

Glycine, serine and threonine metabolism (00260)

Methionine metabolism (00271)

Cysteine metabolism (00272)

Valine, leucine and isoleucine degradation (00280)

Valine, leucine and isoleucine biosynthesis (00660)

Lysine biosynthesis (00300)

Lysine degradation (00310)

Metabolism of Cofactors and Vitamins

Thiamine metabolism (00730)

Riboflavin metabolism (00740)

Vitamin B6 metabolism (00750)

Nicotinate and nicotinamide metabolism (00760)

Pantothenate and CoA biosynthesis (00770)

Biotin metabolism (00780)

Folate biosynthesis (00790)

Porphyrin and chlorophyll metabolism (00860)

Ubiquinone biosynthesis (00130)

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase (03020)

HTH family transcriptional regulators

sigma factor

Translation

Ribosome (03010)

Translation factors

Aminoacyl-tRNA biosynthesis (00970)

Replication and Repair

DNA polymerase (03030)

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport (01310)

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis (00550)

Cell wall/membrane/envelope biogenesis

Cell division

Cell Motility

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Gemmatimonas aurantiaca T-27^T (= NBRC 100505^T)
Replicon	chromosome
Start / Stop / Direction	34,159 / 32,579 / -
Location	complement(32579..34159)
Type	CDS
Length	1,581 bp (526 aa)

Product	putative ABC transporter ATP-binding protein
Gene name
Functional category	Environmental Information and Cellular Processing - Membrane Transport (01310)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR003439 Family/Domain:IPR003593

BLASTP
Database:UniProtKB:14.0

show BLAST table

1	E=1e-99	Q67Q23_SYMTH	Sugar ABC transporter ATP-binding protein	Alignment
2	E=1e-97	B0R4E4_HALS3	ABC-type transport system ATP-binding protein	Alignment
3	E=1e-97	Q9HR21_HALSA	Ribose ABC transporter ATP-binding	Alignment
4	E=5e-95	B1SER5_9STRE	Putative uncharacterized protein	Alignment
5	E=5e-95	A9FAN9_SORC5	Sugar ABC transporter, ATP-binding protein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:18.0

IPR003439 ABC transporter related (Domain)
	PS00211 ABC_TRANSPORTER_1
	PS50893 ABC_TRANSPORTER_2
	PF00005 ABC_tran
	PD000006 Q8YLE0_ANASP_Q8YLE0;
IPR003593 AAA+ ATPase, core (Domain)
	SM00382 no description
IPR008611 Enterobacterial EspB (Family)
	PD454109 Q9RNV3_BBBBB_Q9RNV3;
IPR017871 ABC transporter, conserved site (Conserved_site)
	PS00211 ABC_TRANSPORTER_1

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

526 amino acids

molecular mass

55,889.63 Da

pI

6.26

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
15.8 (83aa)	10.1 (53aa)	12.2 (64aa)	1.5 (8aa)	2.1 (11aa)	0.8 (4aa)	4.2 (22aa)	2.7 (14aa)	8.9 (47aa)	4.6 (24aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.7 (30aa)	0.2 (1aa)	1.7 (9aa)	2.7 (14aa)	0.8 (4aa)	1 (5aa)	2.3 (12aa)	10.3 (54aa)	7 (37aa)	5.7 (30aa)

>GAU_0024 putative ABC transporter ATP-binding protein
ATGATGGGGCGGGGCGAGACCGCGCAGAGTGAAACAACGCTGCTGTCTCTCGAGAGGCTC
TCACGCCGCTTTGGCGATGTGCAGGCACTCGATGACGCCTCCCTGCGGGTCCGCGCCGGA
ACCGTGCACGCGCTGCTGGGCGAGAATGGCGCAGGCAAGACCACCCTCATGCGCCTCGTC
TTCGGTCTGCTGACCCCCGATGGTGGCACGATGCTTTGGCGTGGTGCATCACTTCGTGTG
CGTTCACCGGCCCACGCGTTGTCGATGGGCATTGGCATGGTGCACCAACACTTCACGTTG
GTACCGGCCATGACCGTGGCTGAAAACGTGGCGCTGGGTGGGCATGGGCGATTCGATCGG
GAAGCCGCCGCGGCACGGGTGCGTGAGGTGGGCGCCCGTGCCGGATTGTCGCTCGACCCA
TCGGCCCGTGTGGACTCCTTGCCGGTGGGCGCGCAGCAGCGCTGCGAAATCGTGAAGGCG
CTGGCGCGTGATGTACAATTGCTCATTCTCGACGAACCCACCGCCGTGCTGGCGCCGTCG
GAGGCGCGCGAACTGCTGGCGTGGGTGCGTCGATTTGCCGACGCGGGCAATGCGGTGGTG
CTCATCACGCACAAACTGCGCGACGCCCTGGCAGTAGCCGATGATGTGACCGTACTGCAT
CGCGGACGTTCGGTGCTCACGATGCGTGCGGCGGACACCACGGAAGCGCATCTGGCCAAT
GCCATGTTGGGTGAGAGAACCATCGCTGCGCCTGGCGACGTGGATGCAGAGACCGTCGTC
GCGGCGGAGCATGCCGCACCAGCACTCGACGACACCGCGGTGGCACCAACGCAGGCTCCG
GAGACGGTGCTCTCGTTGCGCGAGGTGACGTGGCGCGATGCCCGCGGCGTGGTGCGTGTG
CAGCGCGCAAACATGTCGGTGTATCGGGGCGAGATCGTCGGCGTGGCGGCTGTGGAAGGT
GCGGGCCAGCACGAGCTGCTGCGACTGTTGTCGGGGCGCCTGACACCGGAACAGGGCACC
GTGGTGCGTCCGGCCGACGTGGGCTTTGTGCCGGAAGACCGTCATCGTGATGCGCTGTTG
CTGGATGCCCCGCTGTTCGAAAACGTCGCCTTGCGCGGCGCCGGCTTGCGTGGCGGGCGG
CTCGACTGGGCGTACTTCCGTCGGGCGGCGGACGAGTTGATTTCCCGTTTCGATGTCCGT
GCGACCGGCGCTGCCGCGCCCGCGCGCGCGCTCTCCGGTGGAAATCAGCAGAAGTTCGTG
CTGGGGCGAGAACTGAGCGGTGAGCCGCCAGCACTGGTCGTGGAGAATCCTTCGCGCGGT
CTCGACTTCAAAGCCACGCTGGCCGTGCAACAGGCATTGCGCGCGGCGCGCGATCGTGGC
ACCGCCGTGGTGATGTACAGCAGCGACCTCGATGAGGTGCTGATGCTGGCGGATCGGGTG
TATGCCATGCATGCCGGATTGGTGAACGAAGTGATCCCGGACCGCGATGCCGTGGGACGT
GCCATGCTGGGTACTCTCGCCGACGACGCACCGGAATCGCTGGGTGATACCGACCGCACG
CCGGCCGGATCGTCGGCATGA


>GAU_0024 putative ABC transporter ATP-binding protein
MMGRGETAQSETTLLSLERLSRRFGDVQALDDASLRVRAGTVHALLGENGAGKTTLMRLV
FGLLTPDGGTMLWRGASLRVRSPAHALSMGIGMVHQHFTLVPAMTVAENVALGGHGRFDR
EAAAARVREVGARAGLSLDPSARVDSLPVGAQQRCEIVKALARDVQLLILDEPTAVLAPS
EARELLAWVRRFADAGNAVVLITHKLRDALAVADDVTVLHRGRSVLTMRAADTTEAHLAN
AMLGERTIAAPGDVDAETVVAAEHAAPALDDTAVAPTQAPETVLSLREVTWRDARGVVRV
QRANMSVYRGEIVGVAAVEGAGQHELLRLLSGRLTPEQGTVVRPADVGFVPEDRHRDALL
LDAPLFENVALRGAGLRGGRLDWAYFRRAADELISRFDVRATGAAAPARALSGGNQQKFV
LGRELSGEPPALVVENPSRGLDFKATLAVQQALRAARDRGTAVVMYSSDLDEVLMLADRV
YAMHAGLVNEVIPDRDAVGRAMLGTLADDAPESLGDTDRTPAGSSA

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : GAU_0024

Genomic map

Gemmatimonas aurantiaca T-27^T (= NBRC 100505^T) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Distribution of Our Microbial Genomic DNA clones

CDS Information : GAU_0024

Genomic map

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Distribution of Our Microbial Genomic DNA clones

Gemmatimonas aurantiaca T-27^T (= NBRC 100505^T) chromosome