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CDS Information : GAU_0026

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close this sectionGenomic map

Display Clone

Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome

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close this sectionLocation

Organism Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon chromosome
Start / Stop / Direction 36,020 / 34,947 / -
Location complement(34947..36020)
Type CDS
Length 1,074 bp (357 aa)

close this sectionAnnotation

Product putative lipoprotein
Gene name
Functional category Unclassified
- putative function (general)
EC number
Note
KEGG pathway KO:K05519
Sequence feature
References Family/Domain:IPR003760

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=4e-50Q3M9X3_ANAVTBasic membrane lipoproteinAlignment
2E=5e-50Q92X35_RHIMEABC transporter, periplasmic solute-binding proteinAlignment
3E=5e-49A6UGN6_SINMWBasic membrane lipoprotein precursorAlignment
4E=3e-47Q8YLE1_ANASPAlr5361 proteinAlignment
5E=4e-45A8RZ71_9CLOTPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR003760 Basic membrane lipoprotein (Family)
 [16-312]  2.8e-58 PF02608
PF02608   Bmp
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 357 amino acids
molecular mass 37,467.50 Da
pI 8.4
aa composition
AlaValLeuIlePheTrpProMetGlySer
16.2
(58aa)
8.4
(30aa)
8.1
(29aa)
4.5
(16aa)
4.8
(17aa)
0.6
(2aa)
4.5
(16aa)
1.1
(4aa)
9.5
(34aa)
6.2
(22aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5
(18aa)
0.3
(1aa)
3.6
(13aa)
3.9
(14aa)
2
(7aa)
4.5
(16aa)
0.8
(3aa)
5.9
(21aa)
5.6
(20aa)
4.5
(16aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.