CDS Information : GAU_0027

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Gemmatimonas aurantiaca T-27T (= NBRC 100505T) chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
Replicon	chromosome
Start / Stop / Direction	37,067 / 36,051 / -
Location	complement(36051..37067)
Type	CDS
Length	1,017 bp (338 aa)

Product	chromosome partitioning protein ParB
Gene name	parB
Functional category	Environmental Information and Cellular Processing - Cellular Processes
EC number
Note
KEGG pathway	KO:K03497
Sequence feature
References	Family/Domain:IPR004437 Family/Domain:IPR003115 Uniprot:P26497 Pubmed:8071208 Uniprot:Q9RFM2 Pubmed:10671452

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=9e-54 Q1CVJ4_MYXXD ParB family protein Alignment 2 E=1e-52 B0RXL5_XANCB Chromosome partitioning protein Alignment 3 E=2e-52 Q2S573_SALRD SpoOJ protein Alignment 4 E=3e-52 Q097E1_STIAU Chromosome partitioning protein Spo0J Alignment 5 E=5e-52 Q6MGM0_BDEBA Chromosome partitioning protein precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003115 ParB-like nuclease (Domain) SM00470   no description SSF110849   ParB/Sulfiredoxin PF02195   ParBc IPR004437 ParB-like partition protein (Domain) TIGR00180   parB_part: ParB-like partition proteins IPR004437 ParB-like partition protein (Family) TIGR00180   parB_part: ParB-like partition proteins
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	338 amino acids
molecular mass	36,262.20 Da
pI	9.7
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16 (54aa) 6.8 (23aa) 12.1 (41aa) 3.3 (11aa) 2.1 (7aa) 0.3 (1aa) 6.5 (22aa) 0.9 (3aa) 7.4 (25aa) 3.8 (13aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.7 (16aa) 0 (0aa) 3.3 (11aa) 4.7 (16aa) 0.3 (1aa) 3 (10aa) 0.6 (2aa) 10.9 (37aa) 6.2 (21aa) 7.1 (24aa)

>GAU_0027 chromosome partitioning protein ParB
ATGACCCCCGAACCTCCCCGCCGACTCGGCCGCGGTCTCGACGCGCTACTCGCTCGTCGT
GATCCCAAGCCCGCCGCTGCAGACGCCGCCGCGACGGCTCGCGCTGCTGACGCGCCGGAC
AACGCCGGCGGCAGCGCGGTGGCCAGTGGCACAGCGGGTGGGCATGCGGAGCCCGAGGCG
GTCGGCGAAGCCGGGACACTGCGGCAGCTCTCGCTCTCCCAGATTCGCGCCAACCCGTTC
CAGCCACGTCAGGAATTTCGCCCCGAAGAACTGGCCGACCTGGAAGGCAGTCTCCGGGTG
AACGGCCTCCTCCAACCCATCACCGTTCGGCCGGCTCCCAACGGGCAGGGCTTCGAACTC
ATCGCTGGCGAGCGCCGCTTCCGCGCCGCCACACGCCTGGGCTGGACCGAGATCCCGGCC
CTCGTGCGCAACGTCGACGACAAGACGCTGCTCACCCTGGCCATGATCGAGAACCTGCAG
CGCGCCGATCTCGATCCCATCGAAGAGGCCGACGGGTACCAGCGCCTCATCGACGACTTC
GGGCTCACCAACCAGGAAGTCGCCGACATCGTCGCCAAGGACCGCTCGACGGTGGCCAAC
GCCCTGCGCCTCCGCCAACTGCCGGCATCCGTCCGCCGCATGCTGCAGGAAAAGCAGCTC
ACCGCAGGCCATGCCCGCGCCCTGCTTCCACTGGCCAGTGAGCGGGCCATCGTCGATCTC
GCGCGTGATGTGGTAGCGAACCAGCTCTCGGTGCGCGAGGTGGAGCGACGCGTCCAGGCT
GGCCGTCCCGCCCCGCCAGCCGCCGGGCGCAAGCCGGCCGCCGATGCCGGGAAAACCGTT
CCAGCCGGGGCCTCGGCTGCCGTCGTCCGTCAGATCGAAGAGAAGCTGCGCCGGAAACTG
CAAACGACCGTCTCACTGAATCTGACGGCCAAGGACAAGGGAGAAGTGCGCATCGCGTTT
TTCTCCAATGATGATCTCGAGCGCGTGCTCGGGCTGTTGGGCGTATCACTCGAATAG


>GAU_0027 chromosome partitioning protein ParB
MTPEPPRRLGRGLDALLARRDPKPAAADAAATARAADAPDNAGGSAVASGTAGGHAEPEA
VGEAGTLRQLSLSQIRANPFQPRQEFRPEELADLEGSLRVNGLLQPITVRPAPNGQGFEL
IAGERRFRAATRLGWTEIPALVRNVDDKTLLTLAMIENLQRADLDPIEEADGYQRLIDDF
GLTNQEVADIVAKDRSTVANALRLRQLPASVRRMLQEKQLTAGHARALLPLASERAIVDL
ARDVVANQLSVREVERRVQAGRPAPPAAGRKPAADAGKTVPAGASAAVVRQIEEKLRRKL
QTTVSLNLTAKDKGEVRIAFFSNDDLERVLGLLGVSLE

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.